Query= MSMg01no334_n23.b1 MSMg01no334_n23.b1 CHROMAT_FILE:
MSMg01no334_n23.b1 PHD_FILE: MSMg01no334_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:26 2005
(641 letters)
>mm_chr9_31959153_31960193
Length = 1041
Score = 915 bits (473), Expect = 0.0
Identities = 519/537 (96%), Gaps = 7/537 (1%)
Strand = Plus / Minus
Query: 106 tccctgtctagtcctcctttaccaagggaaacactgggtttcctgttagaactccatggg 165
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1041 tccctgtctagtcctcctttaccaagggaaaccctgggtttcctgttagaactccatggg 982
Query: 166 agccaggtgtgctggcacacacctttgataccagcactggagaagcagtggcagccagat 225
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 981 agccaggtgtgctggcacacacctgtaataccagcactggagaagcagtggcagccagat 922
Query: 226 ctctgagagttcgaggccagcctggtctccaaatcgagctcaaaggtaaccatgg-ttgt 284
|||||||||||| ||||||||||||||||||||| ||||||||||||| || || ||||
Sbjct: 921 ctctgagagttcaaggccagcctggtctccaaattgagctcaaaggtaggca-ggattgt 863
Query: 285 tacacagagaaaccctatggggggccggggggcgggcaaagattcaggtattctatatta 344
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 862 tacacagagaaaccctatgggg----gggggg-gggcaaagattcaggtattctatatta 808
Query: 345 caataaactctagatatctccttcagaaaaacaaacctagggttccataattcaaccgaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 caataaactctagatatctccttcagaaaaacaaacctagggttccataattcaaccgaa 748
Query: 405 aaggcggactttccttaataaatgagattatgcattagaggttaagaggccagctctata 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aaggcggactttccttaataaatgagattatgcattagaggttaagaggccagctctata 688
Query: 465 cgttctcgttagacaaatgcaacctagtanacaacaatatagaaggatgaaaataagtat 524
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 687 cgttctcgttagacaactgcaacctagtaaacaacaatatagaaggatgaaaatacgtat 628
Query: 525 ttttagganagtgagttgcatatagacctgttcagttcattgttgaattacaatgtgaga 584
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttttaggaaagtgagttgcatatagacctgttcagttcattgttgaattacaatgtgaga 568
Query: 585 cttaacaatataagttgttacatgcatagaagactctgatctagttaaactatttct 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cttaacaatataagttgttacatgcatagaagactctgatctagttaaactatttct 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_n23.g1 MSMg01no334_n23.g1 CHROMAT_FILE:
MSMg01no334_n23.g1 PHD_FILE: MSMg01no334_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:26 2005
(566 letters)
>mm_chr9_31769973_31770938
Length = 966
Score = 1042 bits (539), Expect = 0.0
Identities = 560/567 (98%), Gaps = 2/567 (0%)
Strand = Plus / Plus
Query: 1 cttagagaaaaaaa-ggaaggggacataaaaagagggaattcctaatctccaccaaaaaa 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cttagagaaaaaaaaggaaggggacataaaaagagggaattcctaatctccacaaaaaaa 260
Query: 60 ttcactcctgtgttggtttgaataggtatggcccccatcgacccacatgtttaaatggtt 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ttcactcctgtgttggtttgaataggtatggcccc-atcgacccacatgtttaaatggtt 319
Query: 120 ggacttagggagtggcactattaggaagtgtggccttgttagaggaagtgtatcactgtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggacttagggagtggcactattaggaagtgtggccttgttagaggaagtgtatcactgtt 379
Query: 180 ggggcaggctttgaggtctcctatgctcaagctacacccagtgtgacacagtttccttct 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggggcaggctttgaggtctcctacgctcaagctacacccagtgtgacacagtttccttct 439
Query: 240 gctgcctgccgatctagatgtagaattctcagcttcttccccagcaccatgtctgacggc 299
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gctgcctgccgatcaagatgtagaattctcagcttcttccccagcaccatgtctgacggc 499
Query: 300 acactgccaagcttcctgccatggtgataatggactaaacctctgaaactgtaaaacagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acactgccaagcttcctgccatggtgataatggactaaacctctgaaactgtaaaacagc 559
Query: 360 cccaatcaaatgttttcctttataagagttgaattgatcatggtgtttttcacagcaata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccaatcaaatgttttcctttataagagttgaattgatcatggtgtttttcacagcaata 619
Query: 420 aagctaactaagaaaacaacaaactaagaaaacccatttgcaacagagcttggagaagca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagctaactaagaaaacaacaaactaagaaaacccatttgcaacagagcttggagaagca 679
Query: 480 ggttctaaatagaaactgtgagtgaccattgggagcaggggcaaggaccaagctaagcca 539
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 680 ggttctaaatagaaactgtgattgaccattgggagcaggggcaaagaccaagctaagcca 739
Query: 540 cagactggctgctctatagggcaagag 566
|||||||||||||||||||||||||||
Sbjct: 740 cagactggctgctctatagggcaagag 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
