Query= MSMg01no335_d22.b1 MSMg01no335_d22.b1 CHROMAT_FILE:
MSMg01no335_d22.b1 PHD_FILE: MSMg01no335_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:56 2005
(496 letters)
>mm_chr9_122988064_122988959
Length = 896
Score = 944 bits (488), Expect = 0.0
Identities = 494/496 (99%)
Strand = Plus / Minus
Query: 1 gtttggtgtatattccggcatatatcaaactggtaaatgggaccagctgctccacagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gtttggtgtatattccggcatatatcaaactggtaaatgggaccagctgctccacagaga 553
Query: 61 acctgtaggaagcccaaatgtgactttcaggccctgcccatttggaagcacttctaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acctgtaggaagcccaaatgtgactttcaggccctgcccatttggaagcacttctaggtc 493
Query: 121 ccccagggcatgttctgggggcagtagatagactgacagtctggttctagttcttcctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccccagggcatgttctgggggcagtagatagactgacagtctggttctagttcttcctta 433
Query: 181 tcaagattgtccctagacagagttgtgttgcctgtgcctcatggggagagagagcatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcaagattgtccctagacagagttgtgttgcctgtgcctcatggggagagagagcatcat 373
Query: 241 ctgccctaactgacgcccgcccaggtcccaggctctgagaaaagcctgggctgccccacc 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 372 ctgccctaactgacgcccgcccaggtcccaggctctgagaagagcctgggctgccccacc 313
Query: 301 ccattcttggccaagactcagaacggacagacagcccctgctctctgcttctctggaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccattcttggccaagactcagaacggacagacagcccctgctctctgcttctctggaagc 253
Query: 361 gcagcagctctatttgaaggaggaaagaaaacacacactcttcctagccccatttttgtt 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gcaacagctctatttgaaggaggaaagaaaacacacactcttcctagccccatttttgtt 193
Query: 421 tttgtttttgtttttcctgagacttggcagggaaagtggcacaggctgggaggactgcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tttgtttttgtttttcctgagacttggcagggaaagtggcacaggctgggaggactgcct 133
Query: 481 tgtcctccaggctcct 496
||||||||||||||||
Sbjct: 132 tgtcctccaggctcct 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_d22.g1 MSMg01no335_d22.g1 CHROMAT_FILE:
MSMg01no335_d22.g1 PHD_FILE: MSMg01no335_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:56 2005
(420 letters)
>mm_chr9_122805076_122805895
Length = 820
Score = 799 bits (413), Expect = 0.0
Identities = 419/421 (99%), Gaps = 1/421 (0%)
Strand = Plus / Plus
Query: 1 tgagttaatttgtttagaagaaggaagtcgggcagtgatcccagcatttgagaggcagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgagttaatttgtttagaagaaggaagtcgggcagtgatcccagcatttgagaggcagag 259
Query: 61 gcaggtatatctctgagtttgaggccagtctagtgcacagagtgagttctgggacagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcaggtatatctctgagtttgaggccagtctagtgcacagagtgagttctgggacagcca 319
Query: 121 agggtacacagagaaaccttgtcttgaaaag-cccccccccataggatatttatcttatt 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 agggtacacagagaaaccttgtcttgaaaagccccccccccataggatatttatcttatt 379
Query: 180 ctctttcaaatgagtgctttctatctggtattcgatcacaaaggcaggataataagaacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctctttcaaatgagtgctttctatctggtattcgatcacaaaggcaggataataagaacc 439
Query: 240 atatattttatttacttctagctttttcttttttaaaactatcttaaaatatatctcatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atatattttatttacttctagctttttcttttttaaaactatcttaaaatatatctcatt 499
Query: 300 aaaaatatatctcatttttaaactttgtgttccacaatttgtgattttcaagcacagaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaaatatatctcatttttaaactttgtgttccacaatttgtgattttcaagcacagaga 559
Query: 360 taatacctcctctacttcattctagcctatgcatttcctcatttatttaaagactgactg 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 560 taatacctcctctacttcattctagcctatgcatttcctcgtttatttaaagactgactg 619
Query: 420 t 420
|
Sbjct: 620 t 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
