BAC Information

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BAC

Clone NameMSMg01-335E13
Chromosome9 (Build37)
Map Location 23,835,841 - 23,836,307
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335E13.T7 (MSMg01no335_e13.b1)MSMg01-335E13.TJ (MSMg01no335_e13.g1)
ACCAG450575AG450576
length713735
length of high quality
(start - end)
410 (213 - 622)475 (76 - 550)
definitionCHROMAT_FILE: MSMg01no335_e13.b1 PHD_FILE: MSMg01no335_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:59 2005CHROMAT_FILE: MSMg01no335_e13.g1 PHD_FILE: MSMg01no335_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATAGGTACAGGATCCGCGGAATTCTCAATTTA
TGCCCCTCAAATATCTGAGAAATGCTCTCTAAAAAAGTTCAACGTCCTTA
GTCAACAGGGAAGTGCAAATCAAAACTACATTGAGATTCCATCTTACACC
TGTCAGATGGTTAAAATCAAAATCACAAATGACAGCTCATGCTGGCAGGA
ATATGAAGTAGAACATTCTGCCATTGCTGATGGAAGTGGAAAATTTTACA
ACCATCAAAAATATGATGGCATTTCCTCAGAAGGCTGGGAATCAATCAAT
TTCAATATCCAGCTATATATCCTGCATATACCCAAAAGACTCTTCATCTT
ACCACTTGGACATTCACTCAACCATGTTCATTGTAGCAGTATTCATAATA
ACCAGAGATCAGAAACAACCTAGATGGCCCTTAATCAAAGAATGGATAAA
TAAGATGTGCTACATTTACACAATGGAATATTACTCAGCTGTTGAAAAAA
TGGCATCATGAAATCTGCAGACAAATAGTTGGAACTTGAAAAGAAAATCA
TCCTGAGTGAAATAACCCACATCAAGAAAGATAAAGATGCCATATATTTA
TTTAGATGTGGATATTACACATTAAGTATGTGATAACTAAGTTACAATCT
GTAGTCCCAAAGAAGTTAGGTATAAAACAAGCATCCAAGGGTGAACATAT
GGATCTCTCTGAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTGGAATCACATAGTGCCACATC
TGTCCTGTCTCANATGAGTCCCACCGATGGCCAGTCTTATTCATATTTAA
GTCATAAGTTTAAGAACAAAGTATTTACCTTCATCATTATTTAAGTGACA
TATTTTGATACTTCAATTTATTATTTCTATGACTAAAGAGCATTTAAGAG
GTGTCTGCCTGATAGTTTCTAGAAGGGTAGAAGCCTCAGGCTACATGTCT
GGTGGGTTGTGTCATGTATGTCATCACTGTCTGTCAAACATGGCCAAGTA
GAAACTGTTATGAGTGGGCTAGTGTGGTGCTCAGTGGTAGAGCACCTGCC
CTGTATATGTGAGGCCCTGAGTTCAACATTCAATCTTGAAAAAAGGAAGA
GAAAAAAACTGTGCAAATGTTGAGAATGTGACCTTGGAGGCATCTGTGCA
TTAATGTCACTGGGGCTCTCCATTTGCCTCCCTGGTTCTTCCCTGGTGGT
GGCCAGGGCTTTCCTTGTGTTTCTAAAAAAAGTTCCTGTTCTAGTGTCCC
AGCCCAGAGCTGAACCCCTGCCATCAACTGTCCCATCAATCAGAAGCATG
GCATTTTTTTTTCTGCTGGATCCTGATGTTCCTGATGGTGCGTCCATCTT
TCTCTCTCAGGTTCTTTTCTAATGATCGCTGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_e13.g1 MSMg01no335_e13.g1 CHROMAT_FILE:
MSMg01no335_e13.g1 PHD_FILE: MSMg01no335_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:00 2005
         (475 letters)



>mm_chr9_23835818_23836692
          Length = 875

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/475 (97%), Gaps = 8/475 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctggaatcacatagtgccacatctgtcctgtctcanatgagtcccaccgatggccagt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 490 agctggaatcacatagtgccacatctgtcctgtctcaaatgagtcccaccgatggccagt 431

                                                                       
Query: 61  cttattcatatttaagtcataagtttaagaacaaagtatttaccttcatcattatttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cttattcatatttaagtcataagtttaagaacaaagtatttaccttcatcattatttaag 371

                                                                       
Query: 121 tgacatattttgatacttcaatttattatttctatgactaaagagcatttaagaggtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgacatattttgatacttcaatttattatttctatgactaaagagcatttaagaggtgtc 311

                                                                       
Query: 181 tgcctgatagtttctagaagggtagaagcctcaggctacatgtctggtgggttgtgtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgcctgatagtttctagaagggtagaagcctcaggctacatgtctggtgggttgtgtcat 251

                                                                       
Query: 241 gtatgtcatcactgtctgtcaaacatggccaagtagaaactgttatgagtgggctagtgt 300
           |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 250 gtatgtcaacactgtctgtcacacatggccaagaagaaactgttatgagtgggctagtgt 191

                                                                       
Query: 301 ggtgctcagtggtagagcacctgccctgtatatgtgaggccctgagttcaacattcaatc 360
           ||||||||||||||||||||||||||||||||||        ||||||||||||||||||
Sbjct: 190 ggtgctcagtggtagagcacctgccctgtatatg--------tgagttcaacattcaatc 139

                                                                       
Query: 361 ttgaaaaaaggaagagaaaaaaactgtgcaaatgttgagaatgtgaccttggaggcatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttgaaaaaaggaagagaaaaaaactgtgcaaatgttgagaatgtgaccttggaggcatct 79

                                                                  
Query: 421 gtgcattaatgtcactggggctctccatttgcctccctggttcttccctggtggt 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  gtgcattaatgtcactggggctctccatttgcctccctggttcttccctggtggt 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)