BAC Information

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BAC

Clone NameMSMg01-335E22
Chromosome9 (Build37)
Map Location 96,209,765 - 96,346,688
singlet/doubletdoublet
Overlap geneTfdp2, 1110029I05Rik, Atp1b3, BC043934
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream geneRnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335E22.T7 (MSMg01no335_e22.b1)MSMg01-335E22.TJ (MSMg01no335_e22.g1)
ACCAG450593AG450594
length769761
length of high quality
(start - end)		510 (50 - 559)459 (72 - 530)
definitionCHROMAT_FILE: MSMg01no335_e22.b1 PHD_FILE: MSMg01no335_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:01 2005CHROMAT_FILE: MSMg01no335_e22.g1 PHD_FILE: MSMg01no335_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,346,279 - 96,346,688)(96,209,765 - 96,210,223)
sequence
NNAACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCC
GCGGAATTCCAGGGGGATCTGCCACCCTCACACAGAAATAAAGGCTGGCA
AAACAGCAACACCCATAAAATCAAAGTAAATAGATTATTAAAACAAATGA
ATAAGGGCTAGATGGATGGCTCCCTGGTTAAGAACTCTGACTGCTCTTCC
AGAGGTCCTGAGTTCAATTTTCAGCAATCACATAGTGGCTCACAGCCATC
TTTAATGGGATCTGATGTCCTCTTCTGGTGTGTGTGAAGGCAGCAACACC
ATACTCATATTCATTTTATGAATAAATAAATCTTAAAACAGACAAACAAA
ACTCAGGTTAAGTAGGTGATAAGATTAGAATATTATTGTGCCAGTCTGGT
TTGATATAAACACTAACCAAAGGCTTAACTGACGCTCCAAGAAGAGGAGG
CCCCCGACCACAGTGCTGAGGTCTCAGATCCAGCCTCCCATACACAGACT
AGACACAATTAAACGTGGCCATGGTCATCTTGACACTCACTCTTTGTTTC
TCCTCTATGTTTGTTTTGTTTGAGACCATGTCTTACTCTGTAGCTCAGGC
TGGACAATGATTCTCCTAAGTGCTCTGATCACAGGCGGGAGCCACATGTC
CAGATGAAATTCATTCTTAGGATCCTTGGAGGACCCTGGCTGTGCCTGGC
NAAAATGGACATGGCCCCTTGAAACTAACCAATTATTTTTTTCTGGCTCT
GGAAAAAAGGTATCCAAAA

ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATAACAAGGTAAAACTCACTACTTGAGG
CCTGAACTGGAAGTCAGTTAGTTCTGTCCTTCCACAGAATATGTCCTGGG
GATCAAGCTTCAGCTATTTCTTGCTGTCCCTATCTTTGCTTCTTGATTGT
TGCTCTGTATAGCCAGACATATGAACTGACTACCTTTCAAGGAAGTCCTG
ATTGGTGCTGTGTACTTTTTATATGGTAATTTTTATTTGCTTGTGACAGA
TTCTCACTCTGTAGCCTAGGCTTCTTAGTGATGGTATTTCAAGTACAAGC
CACCCTGCTCAGCCCTGTGACACTGACAAGATTTATTCTTTAGCTTCTCA
AGACAGGATTAACTGGGTTTGGTTTGTTTAAAATGTCTTCCATTTAATTC
AAGTATGTTTAGCACAAGGGCCTCAAGTCCCAACTATCTAGAAGGATCTC
TTGAGTCCAGGAGTTTAAGTTTAAACTACAGTGTGGTACAACCCATCTTA
AAAGAAAGGTCTTTATGCTTGACAGAAATATGCTGTGTCTACCCTGTGAC
TCCGGAAAATGAATTAACCTTCCCAAATGGTTCCCTCAGACCAATCAACC
AGTCTGTTTGAGATATCAACCTCGTTAGAAAGGGTTTTCTCTTTATCAAA
ATTGCCAACCACTTTTTATAATCCTGGTCCTAAAATAAATTTCTTTCCCC
CCTCCTGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_e22.b1 MSMg01no335_e22.b1 CHROMAT_FILE:
MSMg01no335_e22.b1 PHD_FILE: MSMg01no335_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:01 2005
         (510 letters)



>mm_chr9_96345779_96346688
          Length = 910

 Score =  785 bits (406), Expect = 0.0
 Identities = 409/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 101 aataagggctagatggatggctccctggttaagaactctgactgctcttccagaggtcct 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 aataagggctagatggatggctccctggttaagaactctgactgctcttccagaggtcct 851

                                                                       
Query: 161 gagttcaattttcagcaatcacatagtggctcacagccatctttaatgggatctgatgtc 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gagttcaattttcagcaatcacatagtggctcacagccatctttaatgggatctgatgtc 791

                                                                       
Query: 221 ctcttctggtgtgtgtgaaggcagcaacaccatactcatattcattttatgaataaataa 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctcttctggtgtgtgtgaaggcagcaacaccatactcatattcattttatgaataaataa 731

                                                                       
Query: 281 atcttaaaacagacaaacaaaactcaggttaagtaggtgataagattagaatattattgt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atcttaaaacagacaaacaaaactcaggttaagtaggtgataagattagaatattattgt 671

                                                                       
Query: 341 gccagtctggtttgatataaacactaaccaaaggcttaactgacgctccaagaagaggag 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gccagtctggtttgatataaacactaaccaaaggcttaactgacgctccaagaagaggag 611

                                                                       
Query: 401 gcccccgaccacagtgctgaggtctcagatccagcctcccatacacagactagacacaat 460
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 610 gcccccgaccacagtgctgaggtctcagatccagccacccatacacagactagacacaat 551

                                                             
Query: 461 taaacgtggccatggtcatcttgacactcactctttgtttctcctctatg 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 taaacgtggccatggtcatcttgacactcactctttgtttctcctctatg 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no335_e22.g1 MSMg01no335_e22.g1 CHROMAT_FILE:
MSMg01no335_e22.g1 PHD_FILE: MSMg01no335_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:01 2005
         (459 letters)



>mm_chr9_96209565_96210423
          Length = 859

 Score =  841 bits (435), Expect = 0.0
 Identities = 453/459 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataacaaggtaaaactcactacttgaggcctgaactggaagtcagttagttctgtcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataacaaggtaaaactcactacttgaggcctgaactggaagtcagttagttctgtcctt 260

                                                                       
Query: 61  ccacagaatatgtcctggggatcaagcttcagctatttcttgctgtccctatctttgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacagaatatgtcctggggatcaagcttcagctatttcttgctgtccctatctttgctt 320

                                                                       
Query: 121 cttgattgttgctctgtatagccagacatatgaactgactacctttcaaggaagtcctga 180
           ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 321 cttgattgttgttctgtatagctagacatctgaactgactacctttcaaggaagtcctga 380

                                                                       
Query: 181 ttggtgctgtgtactttttatatggtaatttttatttgcttgtgacagattctcactctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggtgctgtgtactttttatatggtaatttttatttgcttgtgacagattctcactctg 440

                                                                       
Query: 241 tagcctaggcttcttagtgatggtatttcaagtacaagccaccctgctcagccctgtgac 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcctaggcttccaagtgatggtatttcaagtacaagccaccctgctcagccctgtgac 500

                                                                       
Query: 301 actgacaagatttattctttagcttctcaagacaggattaactgggtttggtttgtttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 actgacaagatttattctttagcttctcaagacaggattaactgggtttggtttgttaaa 560

                                                                       
Query: 361 aatgtcttccatttaattcaagtatgtttagcacaagggcctcaagtcccaactatctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtcttccatttaattcaagtatgtttagcacaagggcctcaagtcccaactatctag 620

                                                  
Query: 421 aaggatctcttgagtccaggagtttaagtttaaactaca 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggatctcttgagtccaggagtttaagtttaaactaca 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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