GAGGTGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGGTGGATGATCCTATGCAATCTCCTGAAGTATAAAA
TAAATTCATTCTTTCATTCCCTCCCCACTCCCTCCCTCCCCACACCCTCC
CTTCCCCTGCCTCTCTACTTCTTCCCTCTTCCTTCTCTTCCTCTCTCCGT
CCCTTTTGCTTTCCCTCCCTTCCTCCTTTCCTCCCCACTCCTTCCTTCCC
TTCTTCCCTCTCTCTCCCTCCGCCTCTTCTCCTAGGAATTGAATCCTGGC
CCTTTTGCACCCTGTGCATGTTGGCCAAGTGGTGGCTAACCACTGAGCTA
TACTATAAGCCCTTGGTTTACTCTCTGTAACAGTACTATAACCCAAGGCA
TTCCTAATCCTCTAATGGCAGAAAGGTGGGAAACACAAGCCTTTCAAAAA
TTCAGCCATAATACACTTAGAGTCCTCCTCTTATAAATCTCAATTTCCAG
AAAAGCTATCTTTTATTTTAAAGGAAGAGAGTTTTTAGAATTTTCATATA
ACCATTGACATACTAAAATGTCACGGTCAAGATGCTAGGCTTGGCTGGTA
TTAACATCTTTAACAAGTTAGACGTGAAAAGGTATCCCTTGACAGTCAAT
TAGGTTACTTTCTCTGCTTGCCTAATGACTGCAGGACCCTTTGCTGTGAA
TTCTGGTGGTAAGATTTGAAGTGTGACTTTAG

ATTTATGAATCAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGTGACTCCATCCAGCCTTTGGCTA
TCCTTTCTTGGGACCCTATTACTGCTTCATTATTATTGCTTGTATCTATT
TGGGCTCATATAATCTTGGTTTGATTTTGACAAGTTACATATGTCTAGAA
TTTTATTCATTTCTTCTAGATTTCAGAGATTTTTAATACAAGTTTGCAAA
ATATCTTCTAATTATGCTCTTAGCTTCAGAGGCATCCACTACTATATGCT
CTTGTTATATCTAATCTTATTGGTTTGAGTATTCTCTTCCTTTTGGCTAG
CTCGGTTAGGGCCTTGAATATCATGCTTATCTTTCCATAGAAGTATTTTT
TCACTTCAGTGAACCTTTGTATTCTTTGCCTATTTATCGCCCTATATCTG
CCTGTCTTTTATTGTTTCTCACCTCTTCTCATGCTCAGATTTTTTTTTCT
ATTATCTCCTCTTCCTCTTCATGTATATATTCTTATCTTTACCCTTCCCT
CTTTAAACTTGTTTCCTTAACCCTCACCCCTTGCCATCTTCCCTCACCAT
TCCATTCTTCCCCTCTTATCATTCTTCCCTCCTGATCTCTCTTATTTGTT
CTCTCCTACCTATCCACTCCGTATTCCTTTCTCCCCTTTTAATCTTACTT
TTCCCCTATTCTTTTCTACCCTTCCTACTTAACTTTCCGTATCTTCN

Query= MSMg01no335_k02.b1 MSMg01no335_k02.b1 CHROMAT_FILE:
MSMg01no335_k02.b1 PHD_FILE: MSMg01no335_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:27 2005
         (590 letters)



>mm_chr9_118111256_118112245
          Length = 990

 Score = 1083 bits (560), Expect = 0.0
 Identities = 569/572 (99%)
 Strand = Plus / Minus

                                                                       
Query: 19  gatcctatgcaatctcctgaagtataaaataaattcattctttcattccctccccactcc 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 gatcctatgcaatctcctgaagtataaaataaattcattctttcattccctccccactcc 931

                                                                       
Query: 79  ctccctccccacaccctcccttcccctgcctctctacttcttccctcttccttctcttcc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ctccctccccacaccctcccttcccctgcctctctacttcttccctcttccttctcttcc 871

                                                                       
Query: 139 tctctccgtcccttttgctttccctcccttcctcctttcctccccactccttccttccct 198
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tctctccgtccctttcgctttccctcccttcctcctttcctccccactccttccttccct 811

                                                                       
Query: 199 tcttccctctctctccctccgcctcttctcctaggaattgaatcctggcccttttgcacc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tcttccctctctctccctccgcctcttctcctaggaattgaatcctggcccttttgcacc 751

                                                                       
Query: 259 ctgtgcatgttggccaagtggtggctaaccactgagctatactataagcccttggtttac 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 750 ctgtgcatgttggccaagtggtggctaaccactgagctatactataagcccttagtttac 691

                                                                       
Query: 319 tctctgtaacagtactataacccaaggcattcctaatcctctaatggcagaaaggtggga 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tctctgtaacagtactataacccaaggcattcctaatcctctaatggcagaaaggtggga 631

                                                                       
Query: 379 aacacaagcctttcaaaaattcagccataatacacttagagtcctcctcttataaatctc 438
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aacacaagcctttcaaaatttcagccataatacacttagagtcctcctcttataaatctc 571

                                                                       
Query: 439 aatttccagaaaagctatcttttattttaaaggaagagagtttttagaattttcatataa 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aatttccagaaaagctatcttttattttaaaggaagagagtttttagaattttcatataa 511

                                                                       
Query: 499 ccattgacatactaaaatgtcacggtcaagatgctaggcttggctggtattaacatcttt 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ccattgacatactaaaatgtcacggtcaagatgctaggcttggctggtattaacatcttt 451

                                           
Query: 559 aacaagttagacgtgaaaaggtatcccttgac 590
           ||||||||||||||||||||||||||||||||
Sbjct: 450 aacaagttagacgtgaaaaggtatcccttgac 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)