Query= MSMg01no336_i05.b1 MSMg01no336_i05.b1 CHROMAT_FILE:
MSMg01no336_i05.b1 PHD_FILE: MSMg01no336_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:35 2005
(373 letters)
>mm_chr9_25115629_25116401
Length = 773
Score = 700 bits (362), Expect = 0.0
Identities = 368/370 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaagttttttcccaactacagaatatacaagacactgcactctgttacatcaca 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ggaattcaagtttcttcccaactacagaatatacaagacactgcactctgttacatcaca 514
Query: 64 acattgtttattatgtgaattttttttacaatacaaacaaaaaaatacaggtatgcaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 acattgtttattatgtgaattttttttacaatacaaacaaaaaaatacaggtatgcaata 454
Query: 124 tatagatacagctaaatgcagaatggtgacttttttctcttcaagaggccatgattccca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tatagatacagctaaatgcagaatggtgacttttttctcttcaagaggccatgattccca 394
Query: 184 tttctagtaaaacaagactgagtataggaagaaacaggctggtcgttagcttcacaattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttctagtaaaacaagactgagtataggaagaaacaggctggtcgttagcttcacaattt 334
Query: 244 gcctagaaatgatctacaaatgcatttttcctcctgctactttccataaagtgtaaaaag 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 333 gcctagaaatgatctacaaatgcatttctcctcctgctactttccataaagtgtaaaaag 274
Query: 304 ggagttaaaggaaagtttcctcgttggttcctaccatatgaaagatgctatattctattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggagttaaaggaaagtttcctcgttggttcctaccatatgaaagatgctatattctattt 214
Query: 364 tagcagggcc 373
||||||||||
Sbjct: 213 tagcagggcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_i05.g1 MSMg01no336_i05.g1 CHROMAT_FILE:
MSMg01no336_i05.g1 PHD_FILE: MSMg01no336_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:35 2005
(575 letters)
>mm_chr9_24945263_24946237
Length = 975
Score = 1004 bits (519), Expect = 0.0
Identities = 557/579 (96%), Gaps = 16/579 (2%)
Strand = Plus / Plus
Query: 1 ctagctcccaaactatgggtctcttatgtgaaagtatgcattattattaaatttaagaac 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 209 ctagctcccaaactatgggtctcttatgtgaaagtatgcatttttattaaatttaagaac 268
Query: 61 taaccagtcataataatgaacagcattagtcccaacactcaggaggcagaaccaagcaga 120
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 269 taaccagtcataataatgcacagcattagtcccaacactcgggaggcagaaccaagcaga 328
Query: 121 actctaagttcaaacccagcctggactacagagcaagttccaggacagtcaaggctaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actctaagttcaaacccagcctggactacagagcaagttccaggacagtcaaggctaaac 388
Query: 181 agagaaatcctgtgtcaaaaataaacaaataaat----gatctagtgcatatcccattta 236
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 389 agagaaatcctgtgtcaaaaataaacaaataaataaatgatctagtgcatatcccattta 448
Query: 237 gcctaatataataaaataaaaaataaaaagtcatctaatgactaagttaatagcccaaag 296
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcctaa------------aaaaataaaaagtcatctaatgactaagttaatagcccaaag 496
Query: 297 agaatgcctttccccaaaaattcttaaagcttatctactgaacagaaagatgggaccgtg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agaatgcctttccccaaaaattcttaaagcttatctactgaacagaaagatgggaccgtg 556
Query: 357 actaatcttttaacagaccgagggtaggacttggaagcacccaacaaaaggttctgatat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 actaatcttttaacagaccgagggtaggacttggaagcacccaacaaaaggttctgatat 616
Query: 417 ttacaaaatgatatcacagccttccccatttatatcactgcaagccagattaaaaggtct 476
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttacaagatgatatcacagccttccccatttatatcactgcaagccagattaaaaggtct 676
Query: 477 gttctcatttcaatagtatccctggcctttggccctatatggccttttgctcaattgtct 536
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 677 gttctcatttcaatagtatccctggcctttgaccctatatggccttttgctcaattgtct 736
Query: 537 atcccatacaaaaggccatgttcttctccttccatccgg 575
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 737 atccaatacaaaaggccatgttcttctccttccatccgg 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
