NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTCTGATTTAACAACAGCTCTGCTATATTCACTTACTGAAAAG
CGTGCCTTCAGGAGAAGATGCTGACAATTTCATTGACAGATTCCAGAGCC
TAGGTTCAAATTATCCCTGCATTGATTTCTTCTATTTATATTTACTTTGT
GGCAATCTGCATATATGGAAACATTTTGAATTCAACTTTATTTTTACTTT
AGTTCATAACACAAGAATGTCACAGAATCATTGAATGTTAAGTATAAATA
TCTTAGAAATAATCTAGTCCATACTCCTACTTAATAGACAAGGAAAGTAG
AGAATAAAATGATTGCTAACATTGGAACTGGGCCAGCAGCTATGTTTTCT
GACACACAAATGTATCTTTCCCTTGCAACTTCTTCTTCCCCTTGTCAATC
ATTTCCTACCTCCTCCCGCTCTGGAAAATTGACTAATTAAGCTACCACAG
GGGGAGCTAAACGAGCTCCTGGGATGAAGGGAGATGATTATGGATGGAAT
GGAAGAAATTATGGGGAAACGGAGTTGCTACATTCTGTTCTGGATCCCAG
CCAGAAGCAAAAGCATTTAGGTCTCAAAAATTAAGGTGACCAGCCACATC
CTTCCGATTTGGGGGAGCCCCCTAAAAACTCTGGACCATCCAAAATTAAA
TGTTCCCCTTTAGGTGCCATATGTTTCCAAAATGGCACCTTTTGAG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTAACCAAGATGAGCTCTCTA
TCATTTAAAACCAGGACTCATTACAGAAAGCAATAACCAGTCAAAATGTA
GAGAACAACTGGTCTTAGGGTACTCAACCACTTTGAGATATCTACAATAC
AACTCCTGACCGTAAGTCTCAGGGTACATCTTGCAAGTGAGGACAGAAAG
GTTGTATGAACCAGTGGACCAAAAAGTCTGCTGTGAGAGTGGGCCTTGTC
ATTAGGACAAGAAAGTAGCACCCAGGAAATCTCAACAACATGGCTGCTGG
AAGAAGATTTGAATCAGTTGACATCCTAGGTAGATTAGAGAAACCTCATG
AGCCCCACTCCCACCTCAAGAGCTACAAACAATGAGCAAATGCTGAGAGC
AGAGTAGTTAGCCTTCGCTGGGGATGTGCATCCTGATTGGTTAACAAATA
GCAAGTGTTCAGCCTGAGAAGCATACACATGCAGGCAACAGCGAATGGAA
ACAGGAGATGACATTTATAGGCGAATTTGTCTGTATAAATATGTTACCAA
ATAGTTAAAGAGAAGGAGCTATGAGTTTTGGAGGAGAAGAAACACAGGAA
GGTTGGAGGGAGAAAAAAAAAAAAGAAATGGGGTGTTTATTTACCAATAC
TCCCATCCGCCTTTTAAAACTTTTTTCCTTTACCCTCTTAA

Query= MSMg01no337_n09.b1 MSMg01no337_n09.b1 CHROMAT_FILE:
MSMg01no337_n09.b1 PHD_FILE: MSMg01no337_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:20 2005
         (560 letters)



>mm_chr9_32839568_32840527
          Length = 960

 Score = 1019 bits (527), Expect = 0.0
 Identities = 541/549 (98%), Gaps = 7/549 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  ggaattctctga----tttaacaacagctctgctatattcacttactgaaaagcgtgcct 71
           ||||||||||||    |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattctctgacagat---acaacagctctgctatattcacttactgaaaagcgtgcct 271

                                                                       
Query: 72  tcaggagaagatgctgacaatttcattgacagattccagagcctaggttcaaattatccc 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcaggagaagatgctgacaatttcattgacagattccagagcctaggttcaaattatccc 331

                                                                       
Query: 132 tgcattgatttcttctatttatatttactttgtggcaatctgcatatatggaaacatttt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgcattgatttcttctatttatatttactttgtggcaatctgcatatatggaaacatttt 391

                                                                       
Query: 192 gaattcaactttatttttactttagttcataacacaagaatgtcacagaatcattgaatg 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaattcaactttatttttactttagttcataacacaagaatgtcacagaatcattgaatg 451

                                                                       
Query: 252 ttaagtataaatatcttagaaataatctagtccatactcctacttaatagacaaggaaag 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttaagtataaatatcttagaaataatctagtccatactcctacttaatagacaaggaaag 511

                                                                       
Query: 312 tagagaataaaatgattgctaacattggaactgggccagcagctatgttttctgacacac 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tagagaataaaatgattgctaacattggaactgggccagcagctatgttttctgacacac 571

                                                                       
Query: 372 aaatgtatctttcccttgcaacttcttcttccccttgtcaatcatttcctacctcctccc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaatgtatctttcccttgcaacttcttcttccccttgtcaatcatttcctacctcctccc 631

                                                                       
Query: 432 gctctggaaaattgactaattaagctaccacagggggagctaaacgagctcctgggatga 491
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gctctggaaaattgactgattaagctaccacagggggagctaaacgagctcctgggatga 691

                                                                       
Query: 492 agggagatgattatggatggaatggaagaaattatggggaaacggagttgctacattctg 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agggagatgattatggatggaatggaagaaattatggggaaacggagttgctacattctg 751

                    
Query: 552 ttctggatc 560
           |||||||||
Sbjct: 752 ttctggatc 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)