BAC Information

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BAC

Clone NameMSMg01-338M20
Chromosome9 (Build37)
Map Location 110,553,561 - 110,754,064
singlet/doubletdoublet
Overlap geneNbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik
Upstream geneE330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd
Downstream geneTsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338M20.T7 (MSMg01no338_m20.b1)MSMg01-338M20.TJ (MSMg01no338_m20.g1)
ACCAG453243AG453244
length760731
length of high quality
(start - end)		457 (57 - 513)531 (79 - 609)
definitionCHROMAT_FILE: MSMg01no338_m20.b1 PHD_FILE: MSMg01no338_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:31 2005CHROMAT_FILE: MSMg01no338_m20.g1 PHD_FILE: MSMg01no338_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,553,561 - 110,554,013)(110,753,534 - 110,754,064)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGTCCCCTGTCCTGCCAGGCTCTTTGTGATCCTCAGCTCCCCCA
TCAGTGTGTGTGTGTGTGCGCGTGCGTGCACTGCTCCAGCCTGCAGAGGG
GCTGCTCATTTACAGGCTATTTTGCATTAACCTTCCCAAGTGCCAGCATG
CCAGGTGCTGTCCCCATCTCCTGGTCCTCTTGAGCTTCTCCTGTTTCTTC
CTTGAGGACTCTGGTAGGTGTGTTCTACCCATTCACCATGGCAGCTCTGT
CCTGCTCCCTACTTCAGACAACTTGATGCTGCTTCTCTTCCTCCTCTTTC
AGACAGGGTCTCACTTTGTAGACCAAGTTGTTCTGGAACTCATAAGAGAT
CTGACTGCTTCTGCCTTCAAGTGGTGGGATTAAAGGTGAAGAGGGGGGTG
TCAGAATGAGAAAGAGAGAGGGGGGAGAGGGACAGACAGAGAGGAAGAAA
GGGGGAGAGGGAGAGAGAGGAAGATGCATACACACTTTTCCTTCCCCTTC
TTCTTCCCTTTTTCCATTTTTCCCCTATCCTCATTTCTTAATAATTTTTT
CCCCCTATCTCCCCCCCATTATTTTTTCTCTCCCCTAATCTCTTTCTATT
TCTTTTCTTTTTCCTACTTCTATCCACCCTCTCTCCCCATTATTTTTCCT
TTTTTCTCTTCCTCTTTCTTTTTCCCACTCTCCTTTTTTTCTTTATTCAT
TCACTCACTC

CCATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCAGGGCTATGCAGAGAG
ACCTTGACTCAGTATGACCCCCATGCTGCCTGCCCCACCACCCATCTACA
CAGTTCACACCTGACAAGTGTCCAGGCCCCATTCTGAGCTTGTACACAAC
ATGTCGTTCCCAATGAACTTTTTCTGGTTCTTCAGCAGGAGGAACTGGTA
CCGATGATTGCAGATTTCATTGTTCACAATCCTGACAGCCAAACCTTGGA
CACTATAGGGAGTCTTTGGGTGCCCTATGGAGAGAAAGATCTAGTCATGA
CTTCAACTTTGAAACCTGTTTCCAACTCAGAGTCAAATACATTTGTGCCT
GCCATCATGTCCTGAGCTGTTCATTCATAAAAGCTGCCTAGCTTTCAAAA
CTGTTCCCACTCATTGAGAAAATTAAGAACCAAGGGTGGTACACAACTTT
AATCCCAGTACGTGGAAGGCAGAGGCAGGTGGATATCTGAGTTTGAGGCC
AGCTTGGTCTACATAGTGAGTTCCAGGATAGCTAAGGCTATGTAGACAGA
CCTTTGCCTCAAAAACAAACAAACAAACAAACAAAACAACTACAACNAAC
TAAACTAAAACAAAACAAGTGAAGCAAAAGTCTCCCAGGGCGTTAGGGTG
ATAGTCCAGTATCAAGTGAAAACAAGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_m20.b1 MSMg01no338_m20.b1 CHROMAT_FILE:
MSMg01no338_m20.b1 PHD_FILE: MSMg01no338_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:31 2005
         (457 letters)



>mm_chr9_110553357_110554213
          Length = 857

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ccctgtcctgccaggctctttgtgatcctcagctcccccatcagtgtgtgtgtgtgtgcg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 ccctgtcctgccaggctctttgtgatcctcagctcccccatcagtgtgtgtgtgtgtgca 264

                                                                       
Query: 65  cgtgcgtgcactgctccagcctgcagaggggctgctcatttacaggctattttgcattaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgtgcgtgcactgctccagcctgcagaggggctgctcatttacaggctattttgcattaa 324

                                                                       
Query: 125 ccttcccaagtgccagcatgccaggtgctgtccccatctcctggtcctcttgagcttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttcccaagtgccagcatgccaggtgctgtccccatctcctggtcctcttgagcttctc 384

                                                                       
Query: 185 ctgtttcttccttgaggactctggtaggtgtgttctacccattcaccatggcagctctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtttcttccttgaggactctggtaggtgtgttctacccattcaccatggcagctctgt 444

                                                                       
Query: 245 cctgctccctacttcagacaacttgatgctgcttctcttcctcctctttcagacagggtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgctccctacttcagacaacttgatgctgcttctcttcctcctctttcagacagggtc 504

                                                                       
Query: 305 tcactttgtagaccaagttgttctggaactcataagagatctgactgcttctgccttcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcactttgtagaccaagttgttctggaactcataagagatctgactgcttctgccttcaa 564

                                                                       
Query: 365 gtggtgggattaaaggtgaagaggggggtgtcagaatgagaaagagagaggggggagagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtggtgggattaaaggtgaagaggggggtgtcagaatgagaaagagagaggggggagagg 624

                                            
Query: 425 gacagacagagaggaagaaagggggagagggag 457
           |||||||||||||||||||||||||||||||||
Sbjct: 625 gacagacagagaggaagaaagggggagagggag 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_m20.g1 MSMg01no338_m20.g1 CHROMAT_FILE:
MSMg01no338_m20.g1 PHD_FILE: MSMg01no338_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:31 2005
         (531 letters)



>mm_chr9_110753475_110754405
          Length = 931

 Score = 1011 bits (523), Expect = 0.0
 Identities = 529/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagccagggctatgcagagagaccttgactcagtatgacccccatgctgcctgccccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atagccagggctatgcagagagaccttgactcagtatgacccccatgctgcctgccccac 531

                                                                       
Query: 61  cacccatctacacagttcacacctgacaagtgtccaggccccattctgagcttgtacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cacccatctacacagttcacacctgacaagtgtccaggccccattctgagcttgtacaca 471

                                                                       
Query: 121 acatgtcgttcccaatgaactttttctggttcttcagcaggaggaactggtaccgatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acatgtcgttcccaatgaactttttctggttcttcagcaggaggaactggtaccgatgat 411

                                                                       
Query: 181 tgcagatttcattgttcacaatcctgacagccaaaccttggacactatagggagtctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgcagatttcattgttcacaatcctgacagccaaaccttggacactatagggagtctttg 351

                                                                       
Query: 241 ggtgccctatggagagaaagatctagtcatgacttcaactttgaaacctgtttccaactc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 350 ggtgccctatggagagaaagatctagtcatgacttcaactttggaacctgtttccaactc 291

                                                                       
Query: 301 agagtcaaatacatttgtgcctgccatcatgtcctgagctgttcattcataaaagctgcc 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 290 agagtcaaatacatttgtgcctgccgtcatgtcctgagctgttcattcataaaagctgcc 231

                                                                       
Query: 361 tagctttcaaaactgttcccactcattgagaaaattaagaaccaagggtggtacacaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tagctttcaaaactgttcccactcattgagaaaattaagaaccaagggtggtacacaact 171

                                                                       
Query: 421 ttaatcccagtacgtggaaggcagaggcaggtggatatctgagtttgaggccagcttggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttaatcccagtacgtggaaggcagaggcaggtggatatctgagtttgaggccagcttggt 111

                                                              
Query: 481 ctacatagtgagttccaggatagctaaggctatgtagacagacctttgcct 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctacatagtgagttccaggatagctaaggctatgtagacagacctttgcct 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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