Query= MSMg01no338_n08.b1 MSMg01no338_n08.b1 CHROMAT_FILE:
MSMg01no338_n08.b1 PHD_FILE: MSMg01no338_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:33 2005
(643 letters)
>mm_chr9_79545481_79546523
Length = 1043
Score = 1154 bits (597), Expect = 0.0
Identities = 636/667 (95%), Gaps = 28/667 (4%)
Strand = Plus / Minus
Query: 5 gaattctctatcttttcttgatttgtctaaattgtgctttccaatgcttgcttaaaaata 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 gaattctctatcctttcttgatttgtctaaattgtgctttccaatgcttgcttaaaaata 970
Query: 65 tcacccactttataaacccatcttaagttctctagtgtatttgcatcatttacacattta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 tcacccactttataaacccatcttaagttctctagtgtatttgcatcatttacacattta 910
Query: 125 gcttttttttgttagtaattttatattttcatatctgtcccatttgtaagcctccaaagg 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 909 gcttttttttgttagtaattttatattttcatatctgtcccatttgtaaacctccaaagg 850
Query: 185 acaatgtgaattaagcatcacctcttcccatgatcagtttaatgcatgcttagtttaata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 acaatgtgaattaagcatcacctcttcccatgatcagtttaatgcatgcttagtttaata 790
Query: 245 agtatattctaaaaattattcttttgtatatatgtatatgatggacacacacatgctgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 agtatattctaaaaattattcttttgtatatatgtatatgatggacacacacatgctgtg 730
Query: 305 gtgtgtgtgtg----------------------------gagagagagagagagagagag 336
||||||||||| |||||||||||||||||||||
Sbjct: 729 gtgtgtgtgtggagagagagagagagagagagagagagagagagagagagagagagagag 670
Query: 337 agagcagagactgagacctctagtgtcttcgatttccaccttgtttgaggctgtcttttg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agagcagagactgagacctctagtgtcttcgatttccaccttgtttgaggctgtcttttg 610
Query: 397 ttgcactctcctgtgatctcaagctgagcactcttgcctccaaggcctttttcttgctgt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttgcactctcctgtgatctcaagctgagcactcttgcctccaaggcctttttcttgctgt 550
Query: 457 agaagctctgggattacagaagaactccactgtacgccatgttatatggatttggggagg 516
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 549 agaagctctgggattacagaagaactccactgtatgccatgttatatggatttggggagg 490
Query: 517 tcaagtcagttcctcatacttgcatgacaaatgctttcccaactgaggccccttcctggt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcaagtcagttcctcatacttgcatgacaaatgctttcccaactgaggccccttcctggt 430
Query: 577 tactataattattcatttgccagaaagttcctttgctttaccctgggacatctgtctacc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tactataattattcatttgccagaaagttcctttgctttaccctgggacatctgtctacc 370
Query: 637 tgtcact 643
|||||||
Sbjct: 369 tgtcact 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_n08.g1 MSMg01no338_n08.g1 CHROMAT_FILE:
MSMg01no338_n08.g1 PHD_FILE: MSMg01no338_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:33 2005
(538 letters)
>mm_chr9_79362588_79363525
Length = 938
Score = 1009 bits (522), Expect = 0.0
Identities = 534/538 (99%)
Strand = Plus / Plus
Query: 1 tctggtagaatttttggggtcacttatatgtactatcatatcatttgcaaatagtgatat 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctggtagaatttttggggtcacttatatgtactatcatatcatctgcaaatagtgatat 260
Query: 61 tttgacatcttcctttccaatttgtattcctttaatctccttttgttgtctaattgcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgacatcttcctttccaatttgtattcctttaatctccttttgttgtctaattgcttt 320
Query: 121 gactaggacttcaagtgctatattgaataagtagggtgagaatgggcagccttgtccagt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gactaggacttcaagtgctatattgaataagtagggtgagaatggacagccttgtccagt 380
Query: 181 ccctgattttaaaaccttccactcattgtggaaacatgattggcataaaagcattatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgattttaaaaccttccactcattgtggaaacatgattggcataaaagcattatgtg 440
Query: 241 caggaagacagccactatttcccagagtagaaatcctgaattttaaaacatgcctttcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggaagacagccactatttcccagagtagaaatcctgaattttaaaacatgcctttcat 500
Query: 301 ttgcttaaatttattaaaaagattttcagttgggacaagttagccaggtcaggagactct 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcttaaatttattaaaaacattttcagttgggacaagttagccaggtcaggagactct 560
Query: 361 agaaatataaagttgttctaatcattagaagtggaagtggaaaggttctgtttagaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaatataaagttgttctaatcattagaagtggaagtggaaaggttctgtttagaaaaa 620
Query: 421 gctagattagtatgtgttttaatcaatactttactcaaaattcattatttttcctggtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctagattagtatgtgttttaatcaatactttactcaaaattcattatttttcctggtaa 680
Query: 481 ctcacaggttttgaagagcctcaagttttctcagtgatctagatttcctcaaagtgtg 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcaaaggttttgaagagcctcaagttttctcagtgatctagatttcctcaaagtgtg 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
