Query= MSMg01no339_g15.b1 MSMg01no339_g15.b1 CHROMAT_FILE:
MSMg01no339_g15.b1 PHD_FILE: MSMg01no339_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:14 2005
(521 letters)
>mm_chr9_65968041_65968961
Length = 921
Score = 963 bits (498), Expect = 0.0
Identities = 516/522 (98%), Gaps = 1/522 (0%)
Strand = Plus / Plus
Query: 1 ggctatacagagaaaccccatcttgaaacccaccc-gtccccaaaatttaaattacacta 59
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 200 ggctatacagagaaaccccatcttgaaacccaccctgtctgcaaaatttaaattacacta 259
Query: 60 gtgtgtgtgtgtgcactgtagcacatatgtggaggaaatcagagggtaactttcaggatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgtgtgtgtgtgcactgtagcacatatgtggaggaaatcagagggtaactttcaggatt 319
Query: 120 aagttctctcttgggtgcctagactcaaactcaggtggtcagggtcatcagcaagcacct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagttctctcttgggtgcctagactcaaactcaggtggtcagggtcatcagcaagcacct 379
Query: 180 taaccttgctggtctactatctaagacttttaaacatttacatttataacattatattat 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaccttgctggtctactatctaagacttttaaacatttacatttataacattatattat 439
Query: 240 actctcttgttaattttaaatatccgaaggcatatataaataagtcttttgttgtttttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actctcttgttaattttaaatatccgaaggcatatataaataagtcttttgttgtttttg 499
Query: 300 ttttaagacagggtctgctatataacagcctggccttgaacttgtgaccttttgcctcag 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttaagacagggtctgcaatataacagcctggccttgaacttgtgaccttttgcctcag 559
Query: 360 cctcccaagggctgggactacaggcattcagcatttgcacatggctctgtaagtaatatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctcccaagggctgggactacaggcattcagcatttgcacatggctctgtaagtaatatt 619
Query: 420 agactaatcaaagacaaattgttcagcatgacttttctagtctcttgcctttccttcttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agactaatcaaagacaaattgttcagcatgacttttctagtctcttgcctttccttcttt 679
Query: 480 atcacatgctattttcccagacctttctctagtcaatggggt 521
||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 atcacatgctattttcccagacctttctctagtcaatagggt 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_g15.g1 MSMg01no339_g15.g1 CHROMAT_FILE:
MSMg01no339_g15.g1 PHD_FILE: MSMg01no339_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:14 2005
(514 letters)
>mm_chr9_66101650_66102562
Length = 913
Score = 940 bits (486), Expect = 0.0
Identities = 507/514 (98%), Gaps = 1/514 (0%)
Strand = Plus / Minus
Query: 1 ctcatcaaagtcgtaactcacagcagtgatatttgccagggtttcttgttttgtgtctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ctcatcaaagtcgtaactcacagcagtgatatttgccagggtttcttgttttgtgtctcc 654
Query: 61 caggaagggggacgctccacttagactgagtacaacagagaaagaactgtgtaactgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 caggaagggggacgctccacttagactgagtacaacagagaaagaactgtgtaactgagg 594
Query: 121 gaaaggagagagaaaccggaggaaaggtcttgggaacccccaacctgctcgctccaggca 180
||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct: 593 gaaaggagagagaaaccggaggaaaagccttgggaacccccagcctgctcgctccaggca 534
Query: 181 accaaacaacagacttttcagtgcagtctaacccagttcactttctaaacccccaactga 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 accaaacaacagatttttcagtgcagtctaacccagttcactttctaaacccccaactga 474
Query: 241 gtacctgacttcagggagactgtgtttaatggactcagagctcaaagaagagaaacagcc 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtacctgacttcaggg-gactgtgtttaatggactcagagctcaaagaagagaaacagcc 415
Query: 301 ttggcagaacaaagtcaaatacaataaggagccagacaaagaacctggggagcagaggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttggcagaacaaagtcaaatacaataaggagccagacaaagaacctggggagcagaggga 355
Query: 361 agtggggcgatacagctttcagggggtggctgaagtttgcactgactcttatcttaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agtggggcgatacagctttcagggggtggctgaagtttgcactgactcttatcttaaaga 295
Query: 421 atggattggctgccagcagttagagtggctccaggcagaacttccagactgagcgagcaa 480
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgaataggctgccagcagttagagtggctccaggcagaacttccagactgagcgagcaa 235
Query: 481 agcttgagaggcacaggtgtgcaacatttcatcc 514
||||||||||||||||||||||||||||||||||
Sbjct: 234 agcttgagaggcacaggtgtgcaacatttcatcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space: 455112
Effective search space used: 455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
