NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAGATCTCCCTGCCTCTGCCTCCCAAGTGCTGGGATTCAAG
GTGTGAGCCACCATGCCGGGCTAGGAGATTTTCTTGGTTATTAATTAATG
TAGGACTGTCAAGTAGACTTTGAGTGGCAGCATCCTTATATAAGAGTTCC
TAAGCAGGCTGAGGAAGCTAGCTAAACATGAACCTCTGAGCAAGCCAGAA
GAGCCAGTGAGTGAACAGGAAGAATTCTCCAATGTAGACAAAAGGAGAAA
ATGCTCTTTTCTAATTACTTCTGATAAATCAGCAATATGATAATATAGGA
AGTACAGGTTGCCCAATGTTTGTACTACAGCTAATCCAGATTTTTTTAAT
TTATTTTTTTAATTAGATATTTTCTTCATTTACATTCCAAATGCTATCCC
AAAGGTCCCCCAGACCCTCCCCCCTCACTCCCCTAAAACCCACTCCCACT
TCTTGGCCCTGAAGCCCTCCGTACTGAGGCATATAAAGCTTACAAGACCA
AGAGGCCTCTCTTCCCAATGATGGTTGAGTAGGCCATCTTCTGATACATA
TGCAGGTAGAGACACGAGCTCCGAGGGTACTGTTTGGTTCATATTGTTGT
TCTACCTATAGGGTTGCAGACCTCTTTAGCTCCTTGGGTACTTTCTCTTG
CTCCCCCCTGTGGGCCCAGTATTCCATTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCATTTGGAAAATGTCCAGTGGTAGATAAGCACCTAAAGAAAT
GTTCAACATCCTTAGCCATCAGGGAAATGGAAATCAAAACAACACTGAGA
TTCCTCCACATACCAGTCAGAATGGCTAAAATCAAAAAACTCAGGCGACA
GCAGATGCCGGTGAGAATGTGTGTTGTGTCCGGCCAGTGGCTCACATGTC
TGGGTTCTAGTATGGAAAGGCATCTTGGAATCTGGAAGAGAAGAGGGGGG
CTAGGAGGCGTGAGAGAGAGATGAAACCAAGACAGTCAGTCTGATCAAGG
TTCAATTTTTAATGTCAGCAAACACACTTTATAAAGAAGAGGGGAGGCCC
ATCCCTAGCCATGCAAAGTTTCTTTGAAGTAGATAGGTCAGCCTTCTGTT
GGGAACTCACGAAGATCGCAGTTGGGTGCAAACTCCGGAAAATCTTGGAC
GAGAATCGGTATGGCCTCAGGCAGGTTGGGCCTCAGGCAGGTAGTGGCAC
ATGAAAGGAGCAGCACAGCAGGTGGCTCTGCTTAAGCAGTGGATGGTAAT
AGCCAGCCTTGCTAGGCTGGAAGGAGGGTACATTTCTCCCCTTTAAATAA
TATTAAACAAAACTGGACTGAGGCAACAATTTATTTATGCTCCTATAATC
TGCCTTAATTCTTAAGGTCCAAGG

Query= MSMg01no339_l16.b1 MSMg01no339_l16.b1 CHROMAT_FILE:
MSMg01no339_l16.b1 PHD_FILE: MSMg01no339_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:38 2005
         (609 letters)



>mm_chr9_35779231_35780239
          Length = 1009

 Score = 1094 bits (566), Expect = 0.0
 Identities = 596/606 (98%), Gaps = 5/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagatctc-cctgcctctgcctcccaagtgctgggattcaaggtgtgagccac 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagatc-cacctgcctctgcctcccaagtgctgggattcaaggtgtgagccac 263

                                                                       
Query: 64  catgccgggctaggagattttcttggttattaattaatgtaggactgtcaagtagacttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgccgggctaggagattttcttggttattaattaatgtaggactgtcaagtagacttt 323

                                                                       
Query: 124 gagtggcagcatccttatataagagttcctaagcaggctgaggaagctagctaaacatga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagtggcagcatccttatataagagttcctaagcaggctgaggaagctagctaaacatga 383

                                                                       
Query: 184 acctctgagcaagccagaagagccagtgagtgaacaggaagaattctccaatgtagacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acctctgagcaagccagaagagccagtgagtgaacaggaagaattctccaatgtagacaa 443

                                                                       
Query: 244 aaggagaaaatgctcttttctaattacttctgataaatcagcaatatgataatataggaa 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 aaggagaaaatgctcttttctaattacttctgagaaatcagcaatatgataatataggaa 503

                                                                       
Query: 304 gtacaggttgcccaatgtttgtactacagctaatccagatttttttaatttattttttta 363
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 504 gtacaggttgcccaatgtttgtactacagctaatccagattttttaaatttatttttt-a 562

                                                                       
Query: 364 attagatattttcttcatttacattccaaatgctatcccaaaggtcccccagaccctccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 attagatattttcttcatttacattccaaatgctatcccaaaggtcccccagaccctccc 622

                                                                       
Query: 424 ccctcactcccctaaaacccactcccacttcttggccctgaag-ccctccgtactgaggc 482
           ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct: 623 ccctcactcccctaaaacccactcccacttcttggccctgaagtccc-ccatactgaggc 681

                                                                       
Query: 483 atataaagcttacaagaccaagaggcctctcttcccaatgatggttgagtaggccatctt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atataaagcttacaagaccaagaggcctctcttcccaatgatggttgagtaggccatctt 741

                                                                       
Query: 543 ctgatacatatgcaggtagagacacgagctccgagggtactgtttggttcatattgttgt 602
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 742 ctgatacatatgcaggtagagacacgagctccgggggtactgtttagttcatattgttgt 801

                 
Query: 603 tctacc 608
           ||||||
Sbjct: 802 tctacc 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)