Query= MSMg01no339_l23.b1 MSMg01no339_l23.b1 CHROMAT_FILE:
MSMg01no339_l23.b1 PHD_FILE: MSMg01no339_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:39 2005
(520 letters)
>mm_chr9_44065940_44066862
Length = 923
Score = 899 bits (465), Expect = 0.0
Identities = 507/525 (96%), Gaps = 10/525 (1%)
Strand = Plus / Plus
Query: 1 caaaagaattacttaactcctgaaccatctctctagttctatgaaatcttttttcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaagaattacttaactcctgaaccatctctctagttctatgaaatcttttttcaaata 260
Query: 61 ttttcctctattgagtttttgttttgttttcttt--tttttttt-aataagctcttgcca 117
||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 261 ttttcctctattgagtttttgttttcttttcttttcttttttttaaataagctcttgcca 320
Query: 118 agaaagagtggtgaatgcctttaatgccagcacttgggaggcagaggtaggcagatcttt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaagagtggtgaatgcctttaatgccagcacttgggaggcagaggtaggcagatcttt 380
Query: 178 gagttcgaggtcaacctggtctagagaataagttccaggacagctaggactacacagaag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagttcgaggtcaacctggtctagagaataagttccaggacagctaggactacacagaag 440
Query: 238 gaaaaaaaaaaaaaaaaattatagacaagctcttactgctggagtccacactagccttga 297
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gaaaaaaaaaaaaaaaa-----agacaagctcttactgctgaagtccacactagccttga 495
Query: 298 cttcaaagtccccctggtttagccttcagagtacagggattacaggaagttgacactagg 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctttaaagtccccctggtttagccttcagagtacagggattacaggaagttgacactagg 555
Query: 358 ccctgatggtcaaacattttcttgttccggttccggttctcctcctccaccaccaccgcc 417
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 556 ccctgacagtcaaacattttcttgttccggttccggttctcctcctcctccaccactgcc 615
Query: 418 accacctcctcttcctcttcttcctccttttcctccttctgtcctctctagggaggagat 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 616 accacctcctcttcctcttcttcctccttttcctccttctgccctctctagggaggagat 675
Query: 478 ctcgtgtcccaggcatgacctggaatcat--gtagctaaagatgt 520
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 676 ctcgtgtcccaggcatgacctggaatcatatgtagctaaagatgt 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 923
Length adjustment: 10
Effective length of query: 510
Effective length of database: 913
Effective search space: 465630
Effective search space used: 465630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_l23.g1 MSMg01no339_l23.g1 CHROMAT_FILE:
MSMg01no339_l23.g1 PHD_FILE: MSMg01no339_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:39 2005
(280 letters)
>mm_chr9_44244316_44244995
Length = 680
Score = 426 bits (220), Expect = e-123
Identities = 226/228 (99%)
Strand = Plus / Minus
Query: 53 gggagagagaggaggaggaggcgtgaagggagagagagaagagatactgagtttgcagta 112
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 gggagagagaggaggaggaggcgtgaagggagagagaaaagagatactgagtttgcagta 442
Query: 113 cttgtcagtaacccaggcaacagcatccagtccacagctctgccatatagactagaagag 172
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtcagtaacccaggcaacagcatctagtccacagctctgccatatagactagaagag 382
Query: 173 aagtctgatgtgtagccagacttgggagccttggctttatggatggtaactgacagtcat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtctgatgtgtagccagacttgggagccttggctttatggatggtaactgacagtcat 322
Query: 233 gggcatgagtgttcaaggatagtatgtgtggagtaagaagagaatgca 280
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcatgagtgttcaaggatagtatgtgtggagtaagaagagaatgca 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
