Query= MSMg01no339_m18.b1 MSMg01no339_m18.b1 CHROMAT_FILE:
MSMg01no339_m18.b1 PHD_FILE: MSMg01no339_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:43 2005
(499 letters)
>mm_chr9_122219125_122220021
Length = 897
Score = 893 bits (462), Expect = 0.0
Identities = 490/502 (97%), Gaps = 8/502 (1%)
Strand = Plus / Plus
Query: 1 agttctcaccacaaca-aagggattgaattgagagtcactccttcttcaccagcaggaaa 59
|||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttctcaccacaacagagggga-tgaattgagagtcactccttcttcaccagcaggaaa 259
Query: 60 ctgctatgtatggaaacctcattttttttt--cccctaacgttaacctttgttgatcaca 117
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 260 ctgctatgtatggaaacctca----tttttcccccctaacgttaacctttgttgatcaca 315
Query: 118 attgagaaagttaaggggaaggcttgctcgtgatatttttatacaatgctaataaaaaag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 attgagaaagttaaggggaaggcttgctcgtgatatttttatacaatgctaataaaaaag 375
Query: 178 aatataaattggatatttttgaatcgcaagtactcctttgaaagcatatgccactgtgtg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aatataaattggatatttttgaatcgcaagtactcctttgaaagcatatgccactgtgtg 435
Query: 238 attttttagctgtcttaaatcgaagcaattaacatgtcatgcgaggtactcaatctgctc 297
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attttttagctgtcaaaaatcgaagcaattaacatgtcatgcgaggtactcaatctgctc 495
Query: 298 aacgggatatgaatgggatattatgacaaatctcactattcatgaaaattgaattgtata 357
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacgggatatgaatgggatattgtgacaaatctcactattcatgaaaattgaattgtata 555
Query: 358 tttaagaaggtaaaagtacttaactcaagtgtccagtgacaacttgatgatgtgtggagc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttaagaaggtaaaagtacttaactcaagtgtccagtgacaacttgatgatgtgtggagc 615
Query: 418 tgagtcccagcttgaggggtccggatggaagtgtttcgtctttgccataagaggagggat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgagtcccagcttgaggggtccggatggaagtgtttcgtctttgccataagaggagggat 675
Query: 478 tcataggctgtgctgctgtacg 499
||||||||||||||||||||||
Sbjct: 676 tcataggctgtgctgctgtacg 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 897
Length adjustment: 10
Effective length of query: 489
Effective length of database: 887
Effective search space: 433743
Effective search space used: 433743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_m18.g1 MSMg01no339_m18.g1 CHROMAT_FILE:
MSMg01no339_m18.g1 PHD_FILE: MSMg01no339_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:43 2005
(446 letters)
>mm_chr9_122423476_122424321
Length = 846
Score = 847 bits (438), Expect = 0.0
Identities = 444/446 (99%)
Strand = Plus / Minus
Query: 1 attaccaaggatatttaatttaggattaataatcattttaaccaagccattaaagaacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 attaccaaggatatttaatttaggattaataatcattttaaccaagccattaaagaacgt 587
Query: 61 gccaaactagcaaggaagggggaaaatgaatttatgatctgaaatttggagagtaaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gccaaactagcaaggaagggggaaaatgaatttatgatctgaaatttggagagtaaagct 527
Query: 121 ttgctcattagcaagcagcttttcttttgtaacacaaataaatctaataagggtcaatta 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 526 ttgctcattagcaagcagcttttcttttgtaacacaaataaatctaataaaggtcaatta 467
Query: 181 cacattttattaaattttacaaaactgtgttaccagtcccttccttgctcagtgctgtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cacattttattaaattttacaaaactgtgttaccagtcccttccttgctcagtgctgtcc 407
Query: 241 ctgtccggtcagccatgagcagtattctaattgcgtggggtttccccttccggttacttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctgtccggtcagccatgagcagtattctaattgcgtggggtttccccttccggttacttc 347
Query: 301 ccactagcctttggtacaggtgctttcttggatataggtgtttagaaagtccatccccaa 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 346 ccactagcctttggtacaggtgctttcttggatatgggtgtttagaaagtccatccccaa 287
Query: 361 atcaaattgtcttgagaaccaagccccctgagtcacttgtggtgggcgcaggctgaggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atcaaattgtcttgagaaccaagccccctgagtcacttgtggtgggcgcaggctgaggaa 227
Query: 421 atcacagagggggtaactcctcttca 446
||||||||||||||||||||||||||
Sbjct: 226 atcacagagggggtaactcctcttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
