Query= MSMg01no339_p04.b1 MSMg01no339_p04.b1 CHROMAT_FILE:
MSMg01no339_p04.b1 PHD_FILE: MSMg01no339_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:54 2005
(482 letters)
>mm_chr9_53843669_53844551
Length = 883
Score = 890 bits (460), Expect = 0.0
Identities = 475/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagcagtac-cactccctgctgggtgctttgaggaaccttagcttgcctatgtg 62
|||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 683 ggaattcagcaggacatactccctgctggctgctttgaggaaccttagcttgcctatgtg 624
Query: 63 cactccaggcctggggtggcttaactcccttgtctgcagggccgggagaggcctcttcat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cactccaggcctggggtggcttaactcccttgtctgcagggccgggagaggcctcttcat 564
Query: 123 tgactttcctaaaacaaaaaccagccaagactctccagaattttatactaactgttcgag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgactttcctaaaacaaaaaccagccaagactctccagaattttatactaactgttcgag 504
Query: 183 ccaatttagacagaaaaacagcagaccctgccaaccaaagcgatggtcctaaacaacctt 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 503 ccaatttagacagaaaaacagcagaccctgccaaccaaagcaatggtcctaaacaacctt 444
Query: 243 atctgggaagggtgaccctagaacacagacaggcatgccaggaacaaaatgtgaacattg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atctgggaagggtgaccctagaacacagacaggcatgccaggaacaaaatgtgaacattg 384
Query: 303 tgacaaagggatcatggctacccaggacactgcgtctgcctcatctcaggtatcctctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgacaaagggatcatggctacccaggacactgcgtctgcctcatctcaggtatcctctct 324
Query: 363 cactcaagcctatgtggctgtcacacaatctaattcaaaacatttttaatgtggagagac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactcaagcctatgtggctgtcacacaatctaattcaaaacatttttaatgtggagagac 264
Query: 423 actaaaaagaagactgctgaacaaacgacctgactgcccttaaacctcctaaacccagtt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actaaaaagaagactgctgaacaaacgacctgactgcccttaaacctcctaaacccagtt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_p04.g1 MSMg01no339_p04.g1 CHROMAT_FILE:
MSMg01no339_p04.g1 PHD_FILE: MSMg01no339_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:54 2005
(553 letters)
>mm_chr9_53669509_53670460
Length = 952
Score = 1048 bits (542), Expect = 0.0
Identities = 551/554 (99%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 1 aagtgcatttgttatcctcttaattataatgataagacctgtgggtagagatggtgtcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aagtgcatttgttatcctcttaattataatgataagacctgtgggtagagatggtgtcta 259
Query: 61 cagcagctggaatgtttgaaacccaatccctggtggtgtttggaggtcttagaaggcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagcagctggaatgtttgaaacccaatccctggtggtgtttggaggtcttagaaggcttg 319
Query: 121 agggcagagtcctggatgggactggtgcctttataaaagacttcagagagttgccttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agggcagagtcctggatgggactggtgcctttataaaagacttcagagagttgccttcct 379
Query: 181 ccatatgcc-ggtgagagatagtgagaaactggctgcttaaataccaggaagcaggctct 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccatatgcctggtgagagatagtgagaaactggctgcttaaataccaggaagcaggctct 439
Query: 240 catcagacacgcagtccatagacacttagtctctgcaactgtgaaaaatcaacttctgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catcagacacgcagtccatagacacttagtctctgcaactgtgaaaaatcaacttctgtt 499
Query: 300 gttttaaaccacccagtcctggataacatcttgttataacagctaggatggaccgaggca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttttaaaccacccagtcctggataacatcttgttataacagctaggatggaccgaggca 559
Query: 360 tgcctggggctatgtcaaatgtggtgaggaaactaggaacaagctcttttaatacttaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcctggggctatgtcaaatgtggtgaggaaactaggaacaagctcttttaatacttaac 619
Query: 420 ataggtagcaaattaaagcttcagcccccacatcagacaaacacacccccccccccaaca 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 620 ataggtagcaaattaaagcttcagcccccccatcagacaaacacacccccccccc-aaca 678
Query: 480 acaatgacaaagcaggttcaacataaacactgtatttattggctcccttgcttttcccct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acaatgacaaagcaggttcaacataaacactgtatttattggctcccttgcttttcccct 738
Query: 540 gttccatcccgtct 553
||||||||||||||
Sbjct: 739 gttccatcccgtct 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
