BAC Information

Click to search

BAC

Clone NameMSMg01-339P24
Chromosome9 (Build37)
Map Location 3,634,483 - 3,634,962
singlet/doubletsinglet
Overlap geneGucy1a2
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911
Downstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339P24.T7 (MSMg01no339_p24.b1)MSMg01-339P24.TJ (MSMg01no339_p24.g1)
ACCAG454147AG454148
length783751
length of high quality
(start - end)		466 (50 - 515)480 (56 - 535)
definitionCHROMAT_FILE: MSMg01no339_p24.b1 PHD_FILE: MSMg01no339_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:57 2005CHROMAT_FILE: MSMg01no339_p24.g1 PHD_FILE: MSMg01no339_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGAACTTTCCAAGACTTTTATCATAAATGTGTGTTGGATT
TTTTTAAATGCTTTCTCAGCATCTAATGAGATGTTCATGTGGTTTTTGTC
TTTGAGTTTGTTTATAAAGTGTGTTACATTGATGGGTTTCCATATATTAA
ACCATCCCTGAATCCCTAGAAGGAAACCTACTTGATCATGATGGATAACT
GTTTTGATGTGTTCTTGGATTCAATTAGTGAGAATTATATTGAGTATTTT
TGCTTCGATATTCATAAGGGATATTGGTCTGAAGTTCTCTATCTTTGTTG
TGTCTTTATGTGGTTTAGGTATCACAGTAATTGTGGCTTACTAGAATGAA
TTGTATAAAGTAACTTCGTTCGCTATTTTGTGGAATAATTTGAGGAGAAC
TGGAATTAGGTCTTCTTTGAAGGTCTGATAGAATTCTGCACTAAACTCTT
CTGGTCCTGGAGTTTTTTGTTTGGGAGACTATTAATGACTGCTTCTATTT
CTTTANGTGATATAGGATTGTTTTAGGTCATTATTCTGATCCTGGTTTAA
CTTTGGGACCTGGAATCTGTCTAGAAATTTGTTCAATTATCCCAGTTTTT
CCGCTTTTTTGAAGTAAAGCTTTTTTTAACAAGAACCTGAGGGAGGTTTT
GGATTTCCTCCCACCCCTGGGGGTAAAGCCTGGCTTTTTCTTTTTGAATT
TTTGTAATAAAAAAAAAGGACCCCTGGGCCCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTAAGATATGCTTTGATGAGAATGAAAGAGTCCTTCGAGCTGTG
GGCAGCACATTGCAGGACTTCTTCAATGGCTTTGATGCATTGTTAGAACA
CATTAGGACTTCTTTTGGGAAACAGGCCACTCTAGAGTCATCATCTTTCC
TATGCAAAGAGCTTCCTGAAGGTACTCTCATGCTCCATTACTTCCACCCT
CACCATACGGTGGGCTTTGCAATGCTGGGAATGATTAAGGCTGCAGGAAA
GAGAATCTATCACTTAAATGTGGAAGTTGAACAAATTGAAAATGAGAAAC
TCTGCTTTGATGGTTCAAACCCAAGCAATTGCAGCTGTCTTACTTTCCTT
ATCAAAGAATGTGAAACTACTCAGATCACAAAGGACAATCCACAAGGTAC
TTCCCAAGTTCCTGCAGACCTCAGAATCAGCATCAACACCTTCTGCAGAG
CCTTCCCCTTCCATTTGATGTTTGACTCTAACATGGTGGGCCTTCAGCTT
GGGGAGGGCCTACGGAAAACAACTTCGATATGACACTCCCAGAGCACTGA
AGTTTGGAGACTGTTTTGAAACCGTCTCTCCAAGGATTAAAGCCCACCTT
TGAAAAAGGCTTGCTACCATTGTCCCCTCCCTTTGGTAATAAGGACAAAC
CCCAAAATTTTTGTGTCGGAAAATGAAGAATAAGGAAGGAAATCCTGGGC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_p24.g1 MSMg01no339_p24.g1 CHROMAT_FILE:
MSMg01no339_p24.g1 PHD_FILE: MSMg01no339_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:57 2005
         (480 letters)



>mm_chr9_3634283_3635162
          Length = 880

 Score =  928 bits (480), Expect = 0.0
 Identities = 480/480 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaagatatgctttgatgagaatgaaagagtccttcgagctgtgggcagcacattgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaagatatgctttgatgagaatgaaagagtccttcgagctgtgggcagcacattgcag 260

                                                                       
Query: 61  gacttcttcaatggctttgatgcattgttagaacacattaggacttcttttgggaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacttcttcaatggctttgatgcattgttagaacacattaggacttcttttgggaaacag 320

                                                                       
Query: 121 gccactctagagtcatcatctttcctatgcaaagagcttcctgaaggtactctcatgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccactctagagtcatcatctttcctatgcaaagagcttcctgaaggtactctcatgctc 380

                                                                       
Query: 181 cattacttccaccctcaccatacggtgggctttgcaatgctgggaatgattaaggctgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattacttccaccctcaccatacggtgggctttgcaatgctgggaatgattaaggctgca 440

                                                                       
Query: 241 ggaaagagaatctatcacttaaatgtggaagttgaacaaattgaaaatgagaaactctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaagagaatctatcacttaaatgtggaagttgaacaaattgaaaatgagaaactctgc 500

                                                                       
Query: 301 tttgatggttcaaacccaagcaattgcagctgtcttactttccttatcaaagaatgtgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgatggttcaaacccaagcaattgcagctgtcttactttccttatcaaagaatgtgaa 560

                                                                       
Query: 361 actactcagatcacaaaggacaatccacaaggtacttcccaagttcctgcagacctcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actactcagatcacaaaggacaatccacaaggtacttcccaagttcctgcagacctcaga 620

                                                                       
Query: 421 atcagcatcaacaccttctgcagagccttccccttccatttgatgtttgactctaacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcagcatcaacaccttctgcagagccttccccttccatttgatgtttgactctaacatg 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |