BAC Information

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BAC

Clone NameMSMg01-340B06
Chromosome9 (Build37)
Map Location 86,611,196 - 86,611,561
singlet/doubletsinglet
Overlap genenone
Upstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1
Downstream genePrss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340B06.T7 (MSMg01no340_b06.b1)MSMg01-340B06.TJ (MSMg01no340_b06.g1)
ACCAG454205AG454206
length748737
length of high quality
(start - end)
60 (430 - 489)430 (201 - 630)
definitionCHROMAT_FILE: MSMg01no340_b06.b1 PHD_FILE: MSMg01no340_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:02 2005CHROMAT_FILE: MSMg01no340_b06.g1 PHD_FILE: MSMg01no340_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGAATCTTTCTCCTTTCGTGTCTTCTCTCCATTCTTACACA
CAGGTTACTGCATCTGCCAGACTCGTCTCCCTGTGCTCTTTTCCTTTCCC
TTTCTGTCTCTATGCTATAATCCTTAGAGTGTTGAGACGTGTTATGTGTG
CTATAACTCATGAACTGGAACGATTAGTGAGGTGCGCTGTTGTTACACTA
CCTGTGTCTTCTGATCCTTTTGGCTTACGACTCTTATCCTACCTGCCTAT
TGCTCTGTCTTGCTACCACCCTTCGCATGAACATGAAGAACTCTCAGCTC
CTCCCATACGCATGCCTGGATGCTGCCATGCTCCTTGATGATGATGGACT
GAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATATTGTCCTTAGAAGA
GTTGCCTTGGTCATGGTGTCTGTATACCAGGTATTGTGGGAAAATCTAGC
AGGCAAAAGGTGTCACAAGCAAAAAGATTTAATATGCTCTGCCTCATGGG
TAAACTGTAATATTTTTGACAGTTAGTTATCTAGGAATTCTTTTCTTAAT
TTTTATTGATTTGTTACTTCCAAACTTTAAGTATGTGTTACTTTTGATAT
TTAAAAACTATTTCTCAGTGACTTACCCAGAAGTACTTACCATGGAATTG
ACCTCCTAAAACAGCCTCGCCATCTATCCCTGATTGTGAACGTTTCTN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAATCCTCCTGCCTCAACTTCCGAA
ATGCTGCTACTACAAACGCGTGCCATTGAGTTCCTGCTTCGTTTTCTCAT
TTGTTCTACGATGCATTCTCTCAATGGAATCAAAAATACCCTTGCCCCAC
AATTGTCTCCTCTCAGCCTCCTGCTTGCAGGATCACAGGCTTCACTTTGG
TCTTTCATAAGCCCCATGTGATGGGAGGAACCTCATGTCCATTCCAAGGA
CACTGACAGATTCCCCCCTCCATTAAACTTGAGACTCCCTGAGCCCTTGA
CCTATAAGAGCTGATAATAAAACAGTTTCATGCAACTGCAACCTTGAAGA
AGCCGAATAAACAATAACCTAGTTTCTGTCTGTTCAAGGCTGTGCTCCTA
GCGTGACAACCCAACTCCTTAAAATGCTGCTGGAGAAAGCTTGAGGCCGT
TCAAAGAATGTACTCCTCTGTCCAGCTAAGACCTGGGGGGAGGGCCTTGA
CCTCTTTTTTCTTAAAGCATTTTTGTTATAAAACTTGAAGTTATAAATTT
ATTTTCTCTTTGAGATTTATCTTCTGCATTCCAGGAATTTCTTTCTCAAG
GACCTGGGAGCCATCCTTTAAAATGCAACACCAAGAAAGATAGTCTAACC
CCCTCAGTCTCTGTGGGAGAAAATAGGGGTCTAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_b06.g1 MSMg01no340_b06.g1 CHROMAT_FILE:
MSMg01no340_b06.g1 PHD_FILE: MSMg01no340_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:02 2005
         (430 letters)



>mm_chr9_86611196_86612025
          Length = 830

 Score =  654 bits (338), Expect = 0.0
 Identities = 359/366 (98%), Gaps = 2/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgtctcctctcagcctcctgcttgcaggatcacaggcttcactttggtctttcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aattgtctcctctcagcctcctgcttgcaggatcacaggcttcactttggtctttcataa 307

                                                                       
Query: 61  gccccatgtgatgggaggaacctcatgtccattccaaggacactgacagattcccccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gccccatgtgatgggaggaacctcatgtccattccaaggacactgacagattcccccctc 247

                                                                       
Query: 121 cattaaacttgagactccctgagcccttgacctataagagctgataataaaacagtttca 180
            ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 246 gattaaacgtgagactccctgagcccttgacctataagagctgataagaaaacagtttca 187

                                                                       
Query: 181 tgcaactgcaaccttgaagaagccgaataaacaataacctagtttctgtctgttcaaggc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgcaactgcaaccttgaagaagctgaataaacaataacctagtttctgtctgttcaaggc 127

                                                                       
Query: 241 tgtgctcctagcgtgacaa-ccca-actccttaaaatgctgctggagaaagcttgaggcc 298
           ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 126 tgtgctcctagcgtgacaaccccagactccttaaaacgctgctggagaaagcttgaggcc 67

                                                                       
Query: 299 gttcaaagaatgtactcctctgtccagctaagacctggggggagggccttgacctctttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  gttcaaagaatgtactcctctgtccagctaagacctggggggagggccttgacctctttt 7

                 
Query: 359 ttctta 364
           ||||||
Sbjct: 6   ttctta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)