BAC Information

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BAC

Clone NameMSMg01-340D12
Chromosome9 (Build37)
Map Location 55,164,901 - 55,330,044
singlet/doubletdoublet
Overlap geneAI118078, Etfa
Upstream geneGldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4
Downstream geneLOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340D12.T7 (MSMg01no340_d12.b1)MSMg01-340D12.TJ (MSMg01no340_d12.g1)
ACCAG454312AG454313
length725729
length of high quality
(start - end)		616 (50 - 665)567 (75 - 641)
definitionCHROMAT_FILE: MSMg01no340_d12.b1 PHD_FILE: MSMg01no340_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:12 2005CHROMAT_FILE: MSMg01no340_d12.g1 PHD_FILE: MSMg01no340_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,164,901 - 55,165,512)(55,329,478 - 55,330,044)
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTCACTGTTGCAGCACGGCCTCTTTGGATTTTTGATGCTC
ACTTTCAAGTGAATGAGATGTCTCCTACATTTGAACACTTGGTCCCCAGT
TGATGGCAATGTTTGGGAGGTTTAGAAAGTTGTTGTAGGAAGCACGTTAC
TGGGGCCAGGCTTTAGAATGTAAAGGCTCAAACCATTTCAGGTTTGCCCT
CTCTGTTTCATGCTTGCTGTTTAGGATGTCAGCGCTTGGCTTGCTTCTCT
GGTCGCTTTCCTTGCTCTACCGTCATGGACTCTGACCTGCTGGCACCCCA
CACCCAAACAACACAGGCTACCTTGCTCATAGTGTTTTATCATAATGGTA
GGAAGTAACTAACACAACGGTGTAACTAATAACTAACATAACTAATGCAG
CAATTCTCCAGCCTCCCCATCATCTTCCTGACTGTTTGACCCCTCACCCA
TATCTACTAGAAAGTCCATTCTGGTGAAGACAAACTTTTGGTCTTACATG
AATTTCTTCTTCACTTTTTGGTTGTTGTTCACTTGCTTGTTTTTCTTGAC
TTTGGAAACAGAGTCTGGCTATTATAGCTGTGGTGGTTTGAACAGGAATG
GCCCCCGCCCCATAGACTCAGGTGTTTGAATGCTTGGCCATAGGGAGTGA
CATTATTAGGAGGTGTGGCCTTGTN

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGGGGATCAGCACTGTATGTATTT
GTTGGACAATAATTTCAGTGATTTATGTCTTAGTCAGTGATCCTATACAG
CTAACCATTATGATGGTGAATGTGTCCTCACAAGATCTGGAGGTTTTTGA
TCTTAATAAAATGCTTAGCAATTTTTAAATGAGGAACTTTTTGCAAAAAG
ATTTAAAGCATTATGAAGTCACAATGCTGTGTTACTATTGCCATTGCTTT
GTTGGTATTCTGTGTGTATGATGTGGTAGAGAGAGAACTTAGGACTCTCT
ACATGCTTGGTATGTGCTATCCACTGACCTACATTCCTATCTATTATTGC
TATTATAAATTTACATTGATAATATTTATTGTTCATAAAGTCTAAAAGCA
GTTCCAACAACTAACCTATTTTAATTGAGCCTATGTTCATGGACCTTTGT
CATGTTAGAAACTACTAATGACAGTTACAGTCTTGTGTGCTCCTGAGTAC
CTAGTTTAGTTCTACATTTTTATGTTTGCATGAATTTCAGGGAATTTTGC
TCTTTACAGATAAGTACTACTAGAATATTCCCTTTTGCCAAGAAGATGGG
ACAGAATCTCAGTCTGTCGGAGAGCTTACCAGTCATCTTGCTTTAGCCTC
CCAAGTGCTAGGATTTCAGGCTTAAGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_d12.b1 MSMg01no340_d12.b1 CHROMAT_FILE:
MSMg01no340_d12.b1 PHD_FILE: MSMg01no340_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:12 2005
         (616 letters)



>mm_chr9_55164697_55165712
          Length = 1016

 Score = 1098 bits (568), Expect = 0.0
 Identities = 601/612 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcactgttgcagcacggcctctttggatttttgatgctcactttcaagtgaa 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcactgctgaagcacggcctctttggatttttgatgctcactttcaagtgaa 264

                                                                       
Query: 65  tgagatgtctcctacatttgaacacttggtccccagttgatggcaatgtttgggaggttt 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagatgcctcctacatttgaacacttggtccccagttgatggcaatgtttgggaggttt 324

                                                                       
Query: 125 agaaagttgttgtaggaagcacgttactggggccaggctttagaatgtaaaggctcaaac 184
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct: 325 agaaagttgttgtaggaagtacgttactggggccaggctttagaatgtaaagactcaagc 384

                                                                       
Query: 185 catttcaggtttgccctctctgtttcatgcttgctgtttaggatgtcagcgcttggcttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttcaggtttgccctctctgtttcatgcttgctgtttaggatgtcagcgcttggcttg 444

                                                                       
Query: 245 cttctctggtcgctttccttgctctaccgtcatggactctgacctgctggcaccccacac 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 cttctctggtcgctttccttgctctaccatcatggactctgacctgctggcaccccacac 504

                                                                       
Query: 305 ccaaacaacacaggctaccttgctcatagtgttttatcataatggtaggaagtaactaac 364
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 ccaaacaacacaggccaccttgctcatagtgttttatcataacggtaggaagtaactaac 564

                                                                       
Query: 365 acaacggtgtaactaataactaacataactaatgcagcaattctccagcctccccatcat 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaactgtgtaactaataactaacataactaatgcagcaattctccagcctccccatcat 624

                                                                       
Query: 425 cttcctgactgtttgacccctcacccatatctactagaaagtccattctggtgaagacaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttcctgactgtttgacccctcacccatatctactagaaagtccattctggtgaagacaa 684

                                                                       
Query: 485 acttttggtcttacatgaatttcttcttcactttttggttgttgttcacttgcttgtttt 544
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttttggtcttacacgaatttcttcttcactttttggttgttgttcacttgcttgtttt 744

                                                                       
Query: 545 tcttgactttggaaacagagtctggctattatagctgtggtggtttgaacaggaatggcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcttgactttggaaacagagtctggctattatagctgtggtggtttgaacaggaatggcc 804

                       
Query: 605 cccgccccatag 616
           ||||||||||||
Sbjct: 805 cccgccccatag 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_d12.g1 MSMg01no340_d12.g1 CHROMAT_FILE:
MSMg01no340_d12.g1 PHD_FILE: MSMg01no340_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:12 2005
         (567 letters)



>mm_chr9_55329278_55330244
          Length = 967

 Score = 1096 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggggatcagcactgtatgtatttgttggacaataatttcagtgatttatgtcttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgtggggatcagcactgtatgtatttgttggacaataatttcagtgatttatgtcttagt 708

                                                                       
Query: 61  cagtgatcctatacagctaaccattatgatggtgaatgtgtcctcacaagatctggaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cagtgatcctatacagctaaccattatgatggtgaatgtgtcctcacaagatctggaggt 648

                                                                       
Query: 121 ttttgatcttaataaaatgcttagcaatttttaaatgaggaactttttgcaaaaagattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttttgatcttaataaaatgcttagcaatttttaaatgaggaactttttgcaaaaagattt 588

                                                                       
Query: 181 aaagcattatgaagtcacaatgctgtgttactattgccattgctttgttggtattctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaagcattatgaagtcacaatgctgtgttactattgccattgctttgttggtattctgtg 528

                                                                       
Query: 241 tgtatgatgtggtagagagagaacttaggactctctacatgcttggtatgtgctatccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tgtatgatgtggtagagagagaacttaggactctctacatgcttggtatgtgctatccac 468

                                                                       
Query: 301 tgacctacattcctatctattattgctattataaatttacattgataatatttattgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgacctacattcctatctattattgctattataaatttacattgataatatttattgttc 408

                                                                       
Query: 361 ataaagtctaaaagcagttccaacaactaacctattttaattgagcctatgttcatggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ataaagtctaaaagcagttccaacaactaacctattttaattgagcctatgttcatggac 348

                                                                       
Query: 421 ctttgtcatgttagaaactactaatgacagttacagtcttgtgtgctcctgagtacctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctttgtcatgttagaaactactaatgacagttacagtcttgtgtgctcctgagtacctag 288

                                                                       
Query: 481 tttagttctacatttttatgtttgcatgaatttcagggaattttgctctttacagataag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttagttctacatttttatgtttgcatgaatttcagggaattttgctctttacagataag 228

                                      
Query: 541 tactactagaatattcccttttgccaa 567
           |||||||||||||||||||||||||||
Sbjct: 227 tactactagaatattcccttttgccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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