BAC Information

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BAC

Clone NameMSMg01-340H02
Chromosome9 (Build37)
Map Location 112,638,900 - 112,639,289
singlet/doubletsinglet
Overlap genenone
Upstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340H02.T7 (MSMg01no340_h02.b1)MSMg01-340H02.TJ (MSMg01no340_h02.g1)
ACCAG454481AG454482
length745747
length of high quality
(start - end)		391 (44 - 434)635 (75 - 709)
definitionCHROMAT_FILE: MSMg01no340_h02.b1 PHD_FILE: MSMg01no340_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:27 2005CHROMAT_FILE: MSMg01no340_h02.g1 PHD_FILE: MSMg01no340_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCCTGTTCTGTGGACTGGGTGGCACATTGTCAATAGTTCTGCCCAC
CAGGTAATAGGTTTGTACCCATGCCTGAGGGATCACAATTGCTCAGCCAC
CCAGTTCCTGAGTAGGCCACCAGGTCCAGAGCAGCTGTGGACATCTCCCA
GACATCCTACATCAGCCCAGTAGCAGCCTCTGATTGTAAAGCATCAGGAA
GCCTGATGAATGGAGGTCAAGAAGAGAAATAGTTCCTGAGTAGGTAAAGC
AGGAAGAAAGAAAGCAGTAGACTAAGAGATGATGATGATGATGATGATGA
TGATGATGAAGAAGACAGTGATGATGACGGTGGTGGTGATGGTGATCATG
GTGGAGGATGATGATGATGATGATGATGATGCTGGTGGTAGTGGTAATGA
TGANNACNACNNNAAAACTTCTACCTTTGCTGTTTACTTTCTAATTTTCT
TTTTAAGTTTTGACACATTTCTAATTCGNTTTAAATATTTTTTATCTTTT
TTTATATCTGTCTCCTTACATTTCTTCTTTATCTTTTGTTTCTTGCCTTT
TTCTTTAAATTTTGAAATTAAAATCTTCATATTCCTCTTTTGATTTGTCT
CCTTTTTGTTTTTGCAACTCTGATACTTTTTCGTTTTACATTTTGCAAAT
TTTCGCTTTAACTTTTTATTTTTACCTTTTTATNACTTTTTCCNT

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCAGAGATCTGGGGGGTGAGAGACT
CCCAGTACTCAAAAGGAAGGACCTTAGATGAAATGTTCAACAGTAAGGAG
AGGGAACTTATAGAGCCTACCTCCAGCAGGAAGACAGGCTGAGGGATGGA
ATTGCCATCCCAGTCTCATCTCTGACTCATAATTGTTCCTGTCTAAAAGA
ATTGCAGGAATGTAAATGGAGAGGAGCCTGAGGAAAAGAAGATCCAGAGA
CAGGCCCAAAGTAGGATCCACCTCAAGGGGAGGTTCTAAGGCCTGACACT
ATTATTGAGGTAATGGAGTGATCATAAAAAGAGATCTATCATGACTACCC
TCCAAGGGACCCAACAAGCAGCTGAAAGAGTCAGATGCAGATATTTGCAC
CCAAGCAATCGACAGAAACAGCTGACCCCTGTTGTTGAATTACAGAAGGC
TGAAAGAAGCTAAGGAGAAGGGCAATCCTGTAGAAGGACCAGCAGTCTCA
ATTAATCTGGACCCCAGAGATCTCTCAAACACTGGACCACCAAACAGACA
GCATATACCAGCTGATATGAGGCTCCCAACACACATACAATAGAGGACTT
CTGGGTCTCTGTTCATTCAGAAATGATGCACCTAACCCTTTAGAGACTGG
AGGCCCCAGGGAGTTTAGAGGTCCAATGAGGTAGTGGGGGGAAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_h02.b1 MSMg01no340_h02.b1 CHROMAT_FILE:
MSMg01no340_h02.b1 PHD_FILE: MSMg01no340_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:27 2005
         (391 letters)



>mm_chr9_112638806_112639596
          Length = 791

 Score =  646 bits (334), Expect = 0.0
 Identities = 375/390 (96%), Gaps = 3/390 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcctgttctgtggactgggtggcacattgtcaatagttctgcccaccaggtaa 64
           ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 484 gaattcatcctgtactgtggattgggtggcacattgtcaatagttctgcccacctggtaa 425

                                                                       
Query: 65  taggtttgtacccatgcctgagggatcacaattgctcagccacccagttcctgagtaggc 124
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 424 taggtttgtacccatgcttgagggatcacaattgctcagctacccagttcctgagtaggc 365

                                                                       
Query: 125 caccaggtccagagcagctgtggacatctcccagacatcctacatcagcccagtagcagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caccaggtccagagcagctgtggacatctcccagacatcctacatcagcccagtagcagc 305

                                                                       
Query: 185 ctctgattgtaaagcatcaggaagcctgatgaatggaggtcaagaagagaaatagttcct 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctctgattgtagagcatcaggaagcctgatgaatggaggtcaagaagagaaatagttcct 245

                                                                       
Query: 245 gagtaggtaaagcaggaagaaagaaagcagtagactaagagatgatgatgatgatgatg- 303
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 244 gagtacgtaaagcaggaagaaagaaagcagtagactaagagatgatgatgatgatgatgg 185

                                                                       
Query: 304 --atgatgatgatgaagaagacagtgatgatgacggtggtggtgatggtgatcatggtgg 361
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 184 tgatgatgatgatgaagaagacagtgatgatgacagtggtggtgatggtgatcatggtgg 125

                                         
Query: 362 aggatgatgatgatgatgatgatgatgctg 391
           ||||||||| | ||| |||| |||||||||
Sbjct: 124 aggatgatggtaatggtgataatgatgctg 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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