BAC Information

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BAC

Clone NameMSMg01-340K12
Chromosome9 (Build37)
Map Location 50,655,332 - 50,884,827
singlet/doubletdoublet
Overlap genePpp2r1b, Snf1lk2, Layn
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9
Downstream gene4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340K12.T7 (MSMg01no340_k12.b1)MSMg01-340K12.TJ (MSMg01no340_k12.g1)
ACCAG454641AG454642
length723726
length of high quality
(start - end)		475 (45 - 519)511 (81 - 591)
definitionCHROMAT_FILE: MSMg01no340_k12.b1 PHD_FILE: MSMg01no340_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:42 2005CHROMAT_FILE: MSMg01no340_k12.g1 PHD_FILE: MSMg01no340_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,884,365 - 50,884,827)(50,655,332 - 50,655,842)
sequence
NAAATTAGTCCTCATGTCACNTATACGACTCACTATATTCAGAGGATCCG
CGGAATTCTCTGCTTTCTGCGAGCAAAAATGCAACCAGCTCCAGTTCCTG
GGGCCACCCTAGGTATCCGCAACGCTGGAAGTCAGTTCTCTCCCCGGAGT
TACTAAGGGGTGAGGAGGATGTAGCTTGGGTGGGGCAGTTGGCAAACTTC
TTCCAGTGAGTGCCCCTTGAGCGCCTTGCTGCCTGGACCCTTCTAGTGTA
GGCAGCCGATCCTGGATCCGCAGGGCTATGGGAACTGTACCTGTTACTCT
CCTCTGAGGGGAGGGTGGCTGGCCTGGAAGTGCTTGGAGATTGGGAAAGC
GCCTAGTTAGCCAGGAACCAGCCCTGCCAGGCTCCAAGAGTGACTCTCTG
CTTCCTTCCCTGTGTGTGTGTCACTGCAGCCTCGGACTTGGACCCCAGAG
GAGGTACAGTGGTCCGACTTCTTTCTTGTTCCACTAGGTCTGCATGGGGC
GCGGGGGTGGGGGGGTTGGNTNTTNNTTTTTTTTTTTTCTTTTTTTGTTT
TTCNGGTGTTTNTTTTTGTTTGTTCCCCTTTCTTGTCTGTCGGTTTTTTT
CCTTTGCCTGCTTTGTTTTTGTGGGGGCGTGCCTCCCCGTTTTTGGCGTT
CTTGTGTGGTCGGTTTGTTGGCTTTCCCTCGGTGTTGTGCCTTGGGTGGG
CGTCGTGCCGTGTCTCGTTCTTT

NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAACAGAAAATGCAGCA
AATCAGAAGTCTTGAGGACTCCAAGGGCAGCTCTTACTTAAGCGTGCATG
TGTGTGTATGTGTGTGTGCGTATGTGTGTGCGTGTGCATAGCCTAGCAGT
TCCGAACTCCAGACTTTGTCATGAGAGCACATTCCCCAGGATTGCATCTG
AAAAGCTTCACGACATATTTACATTTGTATGTTTCCTGATTTTGGAGGGC
CAGACTTGGCACAGATGACCTTTTGAATGATTCTGGCTTAGCAAACCTGT
CCTGTAGGTGTGGGGAGCCATTAGGTCCTCCCTGTCCCCTGTCCTTTGTA
GAAGATGTCCAACCGCAACCTGGGTTTGTATTCACACATTCAGGCCAGAT
ATTAAGTGGCAAATAATATTTAAAGCTGAGATCTGCCCTGGGTCTCCCAG
CTGTGGAATTCCACCTAGACCTGAAATTCAAACAAACTTAAACAGACACA
TGTGAGCAACGGAAGGAGGGAAACTCAGAGAGGGGATGTGACTGTGTGGA
GGGGTCTGCTCCTTTTCCCTTCATTCATCTACACATTTTTCCTCTTACCT
TCGTTTATCTTTTTTTTTTTCTCTTCGATCCTCCTATCTTTCTTCTTGTT
CTTTTTTCCCCTCTACTTTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_k12.b1 MSMg01no340_k12.b1 CHROMAT_FILE:
MSMg01no340_k12.b1 PHD_FILE: MSMg01no340_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:42 2005
         (475 letters)



>mm_chr9_50884157_50885031
          Length = 875

 Score =  841 bits (435), Expect = 0.0
 Identities = 456/463 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattctctgctttctgcgagcaaaaatgcaaccagctccagttcctggggccaccctag 68
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattctctgcttccagggagcaaaaatgcaaccagctccagttcctggggccaccctag 612

                                                                       
Query: 69  gtatccgcaacgctggaagtcagttctctccccggagttactaaggggtgaggaggatgt 128
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 611 gtatccgcaacgctggaagtcagttctctccccggggttactaaggggtgaggaggatgt 552

                                                                       
Query: 129 agcttgggtggggcagttggcaaacttcttccagtgagtgccccttgagcgccttgctgc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 551 agcttgggtggggcagttggcaaacttcttccagtgagtgccccttgagcgccatgctgc 492

                                                                       
Query: 189 ctggacccttctagtgtaggcagccgatcctggatccgcagggctatgggaactgtacct 248
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctggacccttctagtggaggcagccgatcctggatccgcagggctatgggaactgtacct 432

                                                                       
Query: 249 gttactctcctctgaggggagggtggctggcctggaagtgcttggagattgggaaagcgc 308
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 431 gttactctcctctgaggggagggtggctggcctggaaatgcttggagattgggaaagcgc 372

                                                                       
Query: 309 ctagttagccaggaaccagccctgccaggctccaagagtgactctctgcttccttccctg 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctagttagccaggaaccagccctgccaggctccaagagtgactctctgcttccttccctg 312

                                                                       
Query: 369 tgtgtgtgtcactgcagcctcggacttggaccccagaggaggtacagtggtccgacttct 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtgtgtgtcactgcagcctcggacttggaccccagaggaggtacagtggtccgacttct 252

                                                      
Query: 429 ttcttgttccactaggtctgcatggggcgcgggggtggggggg 471
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcttgttccactaggtctgcatggggcgcgggggtggggggg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_k12.g1 MSMg01no340_k12.g1 CHROMAT_FILE:
MSMg01no340_k12.g1 PHD_FILE: MSMg01no340_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:42 2005
         (511 letters)



>mm_chr9_50655132_50656042
          Length = 911

 Score =  980 bits (507), Expect = 0.0
 Identities = 510/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaacagaaaatgcagcaaatcagaagtcttgaggactccaagggcagctcttactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaacagaaaatgcagcaaatcagaagtcttgaggactccaagggcagctcttactta 260

                                                                       
Query: 61  agcgtgcatgtgtgtgtatgtgtgtgtgcgtatgtgtgtgcgtgtgcatagcctagcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcgtgcatgtgtgtgtatgtgtgtgtgcgtatgtgtgtgcgtgtgcatagcctagcagt 320

                                                                       
Query: 121 tccgaactccagactttgtcatgagagcacattccccaggattgcatctgaaaagcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccgaactccagactttgtcatgagagcacattccccaggattgcatctgaaaagcttca 380

                                                                       
Query: 181 cgacatatttacatttgtatgtttcctgattttggagggccagacttggcacagatgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgacatatttacatttgtatgtttcctgattttggagggccagacttggcacagatgacc 440

                                                                       
Query: 241 ttttgaatgattctggcttagcaaacctgtcctgtaggtgtggggagccattaggtcctc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgaatgagtctggcttagcaaacctgtcctgtaggtgtggggagccattaggtcctc 500

                                                                       
Query: 301 cctgtcccctgtcctttgtagaagatgtccaaccgcaacctgggtttgtattcacacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgtcccctgtcctttgtagaagatgtccaaccgcaacctgggtttgtattcacacatt 560

                                                                       
Query: 361 caggccagatattaagtggcaaataatatttaaagctgagatctgccctgggtctcccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggccagatattaagtggcaaataatatttaaagctgagatctgccctgggtctcccag 620

                                                                       
Query: 421 ctgtggaattccacctagacctgaaattcaaacaaacttaaacagacacatgtgagcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtggaattccacctagacctgaaattcaaacaaacttaaacagacacatgtgagcaac 680

                                          
Query: 481 ggaaggagggaaactcagagaggggatgtga 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 ggaaggagggaaactcagagaggggatgtga 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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