CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAGTTTTTAATAGCTGAGTAGTACTCCATTATGTAATTGCACC
ACATTTTCTGTATCCATTCCTCTGTTGAAGAACATCTGGGTTCCTTCCAG
CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC
CTTATTACATATTGGAGCATCTTCTGGGTATATGCCCAGGAGTGGTATAG
CTGGGTCCTCAGGTAGTACTATGTCCAATTTTCTGAGGAACCACCAAACT
GATTTCCAGAGTGGTTGTACCATCTTCTAATCCCATCAGCAATGGAGGAG
TGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTTTT
TGATCTTAGACATTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTG
ATTTGCCTTTCCCTGGGCATTTTCTTTACTAAGGATTGATGTGGGAGAAT
CCAGCTCACTAGGGATGGTGGCACCCTTAGGCTGGTGATCCTAAGTGGTA
TAAGAAAGAAGGAGGAGCCGGGAGGTGGTGGCACATGCCTTTAATCCCAG
CACTTAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGACCAGCCTGGT
CTACAGAGTGAATTCCAGGATAGCCAGAGATACACAGAGAAACCCTGTCT
CAAAAAACCAAAAAA

NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGGCTGTCTGTATGGAGTT
AAGAGACCTAGGAACTGGCTGTGGGTTATTTATTTATTTATTTATTTATT
TATTTATTTATTTGGCTTATTCAACTTTGCTGACTCCTTATCTCTCCCTC
TTTTAGATGATAGAGTGGAGGTGGATGTTTTTCAGAGAATTGATTTTATA
TTTATGTTTTATTGTTCTCATATTCATCTTAGGTTCTCATCATAACTCTT
ACGGTTTCCTATGAGCCAATTCCCAGACAAAAGAATTCTCGTCTCATCAG
CCAGCAGCCATCCATACCTGTTTGGCTGAGTGAAGGTCACAGAGCTGTGG
AAAGTAGCCTGGAAGGCAATTCCGTCTGCGATGAAATATAATTTACTAGT
ACATTAAGATAATATAGGTCTCTGAACTGACCCATGATGAGGACATTTAT
GGAAATTAAACAGTCATTAGTTAGGTACAGTTCTTAGCTGTGCGACGTTT
TAAATGTTGAAACTTTATTTTAGTGTATGTTCTTCAGTCGAAGGAAGGTA
AAATAATTTAATAGAAATATACTCGTGTGGCTGTCAACTTCACTTTTATC
ATTCATTATTTTTAAAGAAAGTATTGACATTTATTGAGCATGTGCACAGA
GCTCCAGCTTTGTATGTTCTAAT

Query= MSMg01no340_k13.g1 MSMg01no340_k13.g1 CHROMAT_FILE:
MSMg01no340_k13.g1 PHD_FILE: MSMg01no340_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:42 2005
         (550 letters)



>mm_chr9_54831194_54832143
          Length = 950

 Score = 1013 bits (524), Expect = 0.0
 Identities = 538/550 (97%), Gaps = 12/550 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtggctgtctgtatggagttaagagacctaggaactggctgtgggttatttatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tcagtggctgtctgtatggagttaagagacctaggaactggctgtgggttatttatttat 272

                                                                       
Query: 61  ttatttatttatttatttatttatttggcttattcaactttgctgactccttatctctcc 120
           ||||||||||||||            ||||||||||||||||||||||||||||||||||
Sbjct: 273 ttatttatttattt------------ggcttattcaactttgctgactccttatctctcc 320

                                                                       
Query: 121 ctcttttagatgatagagtggaggtggatgtttttcagagaattgattttatatttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttttagatgatagagtggaggtggatgtttttcagagaattgattttatatttatgt 380

                                                                       
Query: 181 tttattgttctcatattcatcttaggttctcatcataactcttacggtttcctatgagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttattgttctcatattcatcttaggttctcatcataactcttacggtttcctatgagcc 440

                                                                       
Query: 241 aattcccagacaaaagaattctcgtctcatcagccagcagccatccatacctgtttggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcccagacaaaagaattctcgtctcatcagccagcagccatccatacctgtttggct 500

                                                                       
Query: 301 gagtgaaggtcacagagctgtggaaagtagcctggaaggcaattccgtctgcgatgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtgaaggtcacagagctgtggaaagtagcctggaaggcaattccgtctgcgatgaaat 560

                                                                       
Query: 361 ataatttactagtacattaagataatataggtctctgaactgacccatgatgaggacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataatttactagtacattaagataatataggtctctgaactgacccatgatgaggacatt 620

                                                                       
Query: 421 tatggaaattaaacagtcattagttaggtacagttcttagctgtgcgacgttttaaatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatggaaattaaacagtcattagttaggtacagttcttagctgtgcgacgttttaaatgt 680

                                                                       
Query: 481 tgaaactttattttagtgtatgttcttcagtcgaaggaaggtaaaataatttaatagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaactttattttagtgtatgttcttcagtcgaaggaaggtaaaataatttaatagaaa 740

                     
Query: 541 tatactcgtg 550
           ||||||||||
Sbjct: 741 tatactcgtg 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)