Query= MSMg01no340_m13.b1 MSMg01no340_m13.b1 CHROMAT_FILE:
MSMg01no340_m13.b1 PHD_FILE: MSMg01no340_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:52 2005
(587 letters)
>mm_chr9_63764391_63765377
Length = 987
Score = 1036 bits (536), Expect = 0.0
Identities = 572/584 (97%)
Strand = Plus / Minus
Query: 4 ggaattcacccaaagtccttatatcactcctaagaagaggggccctgcaccaggacgccc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ggaattcacccaaagcccttatatcactcctaagaagaggggccctgcaccaggacgccc 728
Query: 64 cagtctcccgagaccccctttaaagtctcctggcctttcatccccttggacaagtgttcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cagtctcccgagaccccctttaaagtctcctggcctttcatccccttggacaagtgttcc 668
Query: 124 catgccaggatttcctgtctctcactgccccgggctccgcaagtgtagtctgcgacctcc 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 667 catgccaggatttcctgtctctcactgccccgggctcctcaagtgtagtctgcgacctcc 608
Query: 184 ttggggaattctccttgaaagcgctgtggctcccacaactacaggcagttccaaaactca 243
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 607 ttggggaattctccttgaaagcgctgtggctcccacaactacagacagttccaaaactca 548
Query: 244 tgcctgctttgttctctgcccctgctatagatggcattagagggccattcttggggactc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgcctgctttgttctctgcccctgctatagatggcattagagggccattcttggggactc 488
Query: 304 agacttcctggggaatgtgaggaaatatgcagggtttcacagagggtcaagaccccagat 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 487 agacttcctggggaatgtgaggaaatatgcagggtttcacagaggatcaagaccccagat 428
Query: 364 ttagaccagagcccctgcttagggcagcttaagtatctgccgttcaatgaccgttcccct 423
|| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 427 ttggaccagagcccctgcttagggcagcttaagtgcctgctgttcaatgaccgttcccct 368
Query: 424 aggaagtgcctgactctgcctcactgagaatttttttgtgatcagtgtcctgctctgggc 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aggaagtgtctgactctgcctcactgagaatttttttgtgatcagtgtcctgctctgggc 308
Query: 484 cctaaatagggagctggcctattctggtgaccttctccctacctgacctcacctcagatt 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 307 cctaaatagggagctggcctattttggtgaccttctccctacctgacctcacctcagatt 248
Query: 544 tggtggccccagagccgctggagaaagaggagctgaggggtaca 587
|||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 247 tggtggccccagagccactggagagagaggagctgaggggtaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_m13.g1 MSMg01no340_m13.g1 CHROMAT_FILE:
MSMg01no340_m13.g1 PHD_FILE: MSMg01no340_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:52 2005
(511 letters)
>mm_chr9_63589716_63590626
Length = 911
Score = 953 bits (493), Expect = 0.0
Identities = 508/513 (99%), Gaps = 3/513 (0%)
Strand = Plus / Plus
Query: 1 tctctggtttgcccttctgtctccttaacgcccaactaaagcagacgatctgctcagggt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tctctggtttgcccttctgtctccttaacgtccaactaaagcagacgatctgctcagggt 260
Query: 61 gccatcagctgcctgctaggcactctgagcacagttacaaatatatttgcatctccctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatcagctgcctgctaggcactctgagcacagttacaaatatatttgcatctccctct 320
Query: 121 tcacaacaagca-caggggatgggaccaagtacaggagtcctttcccgtgttgtccacac 179
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tcacaacaa-caacaggggatgggaccaagtacaggagtcctttcccatgttgtccacac 379
Query: 180 ctgcacgagcctggagcctcactccaagacactcggagtcaacagctattaattaagaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgcacgagcctggagcctcactccaagacactcggagtcaacagctattaattaagaag 439
Query: 240 taccttgtgccacaataagcaccctagtaggtccaggaagcctgctgacaacccactatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taccttgtgccacaataagcaccctagtaggtccaggaagcctgctgacaacccactatc 499
Query: 300 tctgccattgacttcgtgtagcacgacaggctaatgacacatctggattctttccaggat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgccattgacttcgtgtagcacgacaggctaatgacacatctggattctttccaggat 559
Query: 360 agaggcccttggggagaggcccctgagggagaggcctctggggctgttcatgttttggtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agaggcccttggggagaggcccctgagggagaggcctctggggctgttcatgttttggtt 619
Query: 420 ttggtttttg-ttttttttttaatgtttcaacagctgtgtccatctgtgttctaaccaca 478
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttggtttttggttttttttttaatgtttcaacagctgtgtccatctgtgttctaaccaca 679
Query: 479 agaggacaagactgaagactagtgagctgaaga 511
|||||||||||||||||||||||||||||||||
Sbjct: 680 agaggacaagactgaagactagtgagctgaaga 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
