Query= MSMg01no340_m18.b1 MSMg01no340_m18.b1 CHROMAT_FILE:
MSMg01no340_m18.b1 PHD_FILE: MSMg01no340_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:53 2005
(552 letters)
>mm_chr9_120329924_120330874
Length = 951
Score = 1013 bits (524), Expect = 0.0
Identities = 542/548 (98%), Gaps = 1/548 (0%)
Strand = Plus / Plus
Query: 5 gaattcactatatttcccaaatcccccattctggccacattagtgtctccaggagtctaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatatttcccaaatcccccattctggccacattagtgtctccaggagtctaa 264
Query: 65 cgagcttggctagtgactaatgaagagcagatgcgttcacaccttgtctcatttcacaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgagcttggctagtgactaatgaagagcagatgcgttcacaccttgtctcatttcacaga 324
Query: 125 taactctcagcagctcccaggcgactggcatatgctaatcacacaaggctagattataaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taactctcagcagctcccaggcgactggcatatgctaatcacacaaggctagattataaa 384
Query: 185 tggcaacaggagattaaaattagagaaagagacacaggcaccatccctttcagacccgtg 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 tggcaacaggagattaaaattagagaaagagacacagacaccatccctttcagacccgtg 444
Query: 245 gtcctgtggctgatgtagcatggactccgaggcggtcagtgagcgcactgctgtatagct 304
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 gtcct-tggctgatgtagcatggactccgaggcggtcagtgagcgcactgctgtacagct 503
Query: 305 ctgtgatcccagctactccagggctacagcaggaggattgtgagttcaaagccagcatag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgtgatcccagctactccagggctacagcaggaggattgtgagttcaaagccagcatag 563
Query: 365 ccaatacagccagactctggagagatggaggtggggagaagagactattcccacagagaa 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 564 ccaatacagccagactctggagagatggaagtggggagaagagactattcccacagagaa 623
Query: 425 taacacgtccactaacattactgatgcaggctcagttggcaaaaactcgccacacaagtg 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taacatgtccactaacattactgatgcaggctcagttggcaaaaactcgccacacaagtg 683
Query: 485 tgggtttccgagctccggctccctcacccacataaaaagcagagtgcagtagtgtgtacg 544
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgggtttccgagctctggctccctcacccacataaaaagcagagtgcagtagtgtgtacg 743
Query: 545 tgcagtcc 552
||||||||
Sbjct: 744 tgcagtcc 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space: 510022
Effective search space used: 510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_m18.g1 MSMg01no340_m18.g1 CHROMAT_FILE:
MSMg01no340_m18.g1 PHD_FILE: MSMg01no340_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:53 2005
(511 letters)
>mm_chr9_120496791_120497701
Length = 911
Score = 638 bits (330), Expect = 0.0
Identities = 333/334 (99%)
Strand = Plus / Minus
Query: 1 aatctctagcactcacatgaaaagccagcagagaagagcagggtaccactgcaaccccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aatctctagcactcacatgaaaagccagcagagaagagcagggtaccactgcaaccccag 275
Query: 61 cactcctgctgtaagatgtgaggcagaggcaagaaaaccactcagctcatgtaaacagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cactcctgctgtaagatgtgaggcagaggcaagaaaaccactcagctcatgtaaacagta 215
Query: 121 caggagcagaaacatgagagaccccgcctcaaaaaggagtaaggagaggactgactccaa 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 214 caggagcagaaacatgagagaccctgcctcaaaaaggagtaaggagaggactgactccaa 155
Query: 181 aagctgtcctctgtcctccacatatgtgccatgacatatgtatgcacacacacacacact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aagctgtcctctgtcctccacatatgtgccatgacatatgtatgcacacacacacacact 95
Query: 241 gacctccacatatgtgccatgacatatgtatgcacacacacatacactgacctccacata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gacctccacatatgtgccatgacatatgtatgcacacacacatacactgacctccacata 35
Query: 301 tgtgccatgacatatgtatgcacacacatacact 334
||||||||||||||||||||||||||||||||||
Sbjct: 34 tgtgccatgacatatgtatgcacacacatacact 1
Score = 122 bits (63), Expect = 6e-32
Identities = 75/79 (94%), Gaps = 2/79 (2%)
Strand = Plus / Minus
Query: 431 cctccacatatgtgccatgacatat-tatgc-cacatacacacactgacctccacatatg 488
||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 140 cctccacatatgtgccatgacatatgtatgcacacacacacacactgacctccacatatg 81
Query: 489 tgccataacatatgtatgc 507
|||||| ||||||||||||
Sbjct: 80 tgccatgacatatgtatgc 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 3
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
