BAC Information

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BAC

Clone NameMSMg01-341C22
Chromosome9 (Build37)
Map Location 122,985,831 - 123,181,958
singlet/doubletdoublet
Overlap geneZdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158
Upstream geneSnrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4
Downstream geneScp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341C22.T7 (MSMg01no341_c22.b1)MSMg01-341C22.TJ (MSMg01no341_c22.g1)
ACCAG455041AG455042
length780790
length of high quality
(start - end)
428 (41 - 468)341 (72 - 412)
definitionCHROMAT_FILE: MSMg01no341_c22.b1 PHD_FILE: MSMg01no341_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:22 2005CHROMAT_FILE: MSMg01no341_c22.g1 PHD_FILE: MSMg01no341_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,985,831 - 122,986,254)(123,181,614 - 123,181,958)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGCCTGCAGAAAGGCCATCCATAGCCTTTAAGAACAAAACTAAACTCCCT
CAGCCTGCAGCCTGACACCACCTGCCCTTCTGCACAGGCCGTGGGGAGAG
AGCAGAGCAGAAGCAGGTTTGGAAAAGGTTTATTGCATTGTTTCCATGTG
GAAGCACTGACAGAGTTGGGAAGAGGCAGAACGTCCCACCGACTTCTGAA
AAACCACAGGGCTACATTAACTTTCTTCCTACCCACAACTAGAATGAAAA
ACCTTATCCCCACCCCCACCCCAAGCAAAAGCTAAAAAGGGAGTTTTGTG
GTGATTGCTTTAAAACCCACTGGTTTGGGGGACTTCATGGTGCTCAGGTT
CCACGTGGCTGTAGGGTTCAAGAGCAGTCTTCTCTTAACACCTCCTACAT
CCCCTGGTTCTTCCCTAGCTCAAGACCAGCTCTTCCCTGTGTGACTCTGC
TTATCAGNACCTGCTGATGGGAAAGACTGTCCGCGTCATATGCTGACAAC
ACGCGATTAAGGGCTACCTGTCCATTTTTATAAGGTTCTTATACCTACTA
CCCCTTCCCCAATTTACCTCCCTACCAACACGCCTGGGCCCATCCGGGGG
ACTTTCCACCCCAACGCCAAGGTCCTTGCATTCGTTCATACTGAATGTAT
CCTCCCGTCGTTTCCTGCTTCCCCCTATACCCCCATTTTTTCTTTACCTT
TCGTTCCTTCCCTTTAACCCCTTTCCCCCT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTGCCCTTTGGGTCTAAGAAGGTTATCT
CAGTGGAGATGGGAGCTTCTCAAAGGACACACTGTAGCAGCAAAGTCCAG
AACTCACACCCTGGTATGGAACAAAGTAACATCTACTTACTTTGATGGCT
CTGGACACAAAGGCCCTGAGTGTCTTGGGAAGTGGGATATGGCTGAGAAC
AGGATTGACTGAAAGGCTTAGAGATTCTGTGACCAAATGAAGGGGAGGAT
GAGAATAAAGAAAGTGAGGTTGGAAAGCAGGCATGAAAAGAGGTACTGAG
GCCCACGGCAGGCATTGGAGGGCACATGGGCAAACATGGGGCAGATTGAG
GATTTTTGATAGAATGACTGCAGTGTAGCCTCCCTCCATATGATACATCT
CTGGAAGGAGGCATGCGCCACAAAAGACCATCTGATCATTCTGCTCTGTG
TTTTATGTTCTCCCGCACCCCTCATTGCTTCCCATGCTGTGTTTACCAAA
AAATCTGTGAGCGCCTCTCTCCCGCCCTATACTTTACTATAAATTAGAAT
ACCCCATTCCCCCCCCCCCCATTCGTTCCTCCTTTTACCCTCTCCCTTCT
TTTCACCATTTTTTTTATTTCCCTCCCCCCTTACCATCCCCCTTCCTTTC
CCTTACCTTTTTCCTATCACCCTTCCTTTCACCTATTTCCTTTACACCCC
ATCTTATTTTTTATTTATTCTCCCCCCTTTTTTCCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_c22.b1 MSMg01no341_c22.b1 CHROMAT_FILE:
MSMg01no341_c22.b1 PHD_FILE: MSMg01no341_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:22 2005
         (428 letters)



>mm_chr9_122985627_122986454
          Length = 828

 Score =  804 bits (416), Expect = 0.0
 Identities = 422/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcctgcagaaaggccatccatagcctttaagaacaaaactaaactccctcagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcctgcagaaaggccatccatagcctttaagaacaaaactaaactccctcagc 264

                                                                       
Query: 65  ctgcagcctgacaccacctgcccttctgcacaggccgtggggagagagcagagcagaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgcagcctgacaccacctgcccttctgcacaggccgtggggagagagcagagcagaagc 324

                                                                       
Query: 125 aggtttggaaaaggtttattgcattgtttccatgtggaagcactgacagagttgggaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggtttggaaaaggtttattgcattgtttccatgtggaagcactgacagagttgggaaga 384

                                                                       
Query: 185 ggcagaacgtcccaccgacttctgaaaaaccacagggctacattaactttcttcctaccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcagaacgtcccaccgacttctgaaaaaccacagggctacattaactttcttcctaccc 444

                                                                       
Query: 245 acaactagaatgaaaaaccttatccccacccccaccccaagcaaaagctaaaaagggagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaactagaatgaaaaaccttatccccacccccaccccaagcaaaagctaaaaagggagt 504

                                                                       
Query: 305 tttgtggtgattgctttaaaacccactggtttgggggacttcatggtgctcaggttccac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgtggtgattgctttaaaacccactggtttgggggacttcatggtgctcaggttccac 564

                                                                       
Query: 365 gtggctgtagggttcaagagcagtcttctcttaacacctcctacatcccctggttcttcc 424
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 565 gtggctgtagggttcaagagcagtcttctcttagcacctcctacatcccctggttcctcc 624

               
Query: 425 ctag 428
           ||||
Sbjct: 625 ctag 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no341_c22.g1 MSMg01no341_c22.g1 CHROMAT_FILE:
MSMg01no341_c22.g1 PHD_FILE: MSMg01no341_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:22 2005
         (341 letters)



>mm_chr9_123181414_123182158
          Length = 745

 Score =  605 bits (313), Expect = e-177
 Identities = 336/345 (97%), Gaps = 4/345 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgccctttgggtctaagaaggttatctcagtggagatgggagcttctcaaaggacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgtgccctttgggtctaagaaggttatctcagtggagatgggagcttctcaaaggacaca 486

                                                                       
Query: 61  ctgtagcagcaaagtccagaactcacaccctggtatggaacaaagtaa-catctacttac 119
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 485 ctgtagcagcaaagtccagaactcacaccctggtatggaacaaagtaaccatctgcttac 426

                                                                       
Query: 120 tttgatggctctggacacaaaggccctgagtgtcttgggaagtgggatatggctgagaac 179
           ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 425 tttgatggctctggacacaaagggcctgaatgccttgggaagtgggatatggctgagaac 366

                                                                       
Query: 180 aggattgactgaaaggcttagagattctgtgaccaaatgaa---ggggaggatgagaata 236
           |||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||
Sbjct: 365 aggattgactgaaaggcttagagattctgtgaccaaatgaaggggggggggatgagaata 306

                                                                       
Query: 237 aagaaagtgaggttggaaagcaggcatgaaaagaggtactgaggcccacggcaggcattg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagaaagtgaggttggaaagcaggcatgaaaagaggtactgaggcccacggcaggcattg 246

                                                        
Query: 297 gagggcacatgggcaaacatggggcagattgaggatttttgatag 341
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagggcacatgggcaaacatggggcagattgaggatttttgatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 745
Length adjustment: 9
Effective length of query: 332
Effective length of database: 736
Effective search space:   244352
Effective search space used:   244352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)