BAC Information

Click to search

BAC

Clone NameMSMg01-341L04
Chromosome9 (Build37)
Map Location 117,432,604 - 117,432,977
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341L04.T7 (MSMg01no341_l04.b1)MSMg01-341L04.TJ (MSMg01no341_l04.g1)
ACCAG455430AG455431
length758861
length of high quality
(start - end)
434 (43 - 476)---
definitionCHROMAT_FILE: MSMg01no341_l04.b1 PHD_FILE: MSMg01no341_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005CHROMAT_FILE: MSMg01no341_l04.g1 PHD_FILE: MSMg01no341_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCTCTATAGGAGGGGTATATATGACTTTCAGATGTATTATTCTAGCA
TAGTCAGAGCGTGATGTTGCATGCAATGTGAAACAGGGTGCACATTCCAC
AATCCACCCATCTCTCTTCATTCCCAATATCTTACTTTCATTTTTTTACT
CTCCCTCCCTCCCTCTCTCCTCCCTCCCTTCCTCCCTCCCCTCTCTCCCT
TCCTTGCTTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTC
TTCCTCTTCCTCCTCCTCTTTTTCATTCTTTATGTTAATCTGGAACACTT
TATATAGACCAGGAGGTCCTTAAACTCTGACAATTCTCCTGCCTCTACCC
CTCAGGTGCTGTGATTGTAGGTGAGCAGCACCACACAGGACAGCATTTTT
AATCTTATTAATCTTATTTTTGCTCGTTTTCTTTTTAATCTTCCAGCCTG
CATCCGGGTGCAGTGCTCAGAAGAGCCTACGTGTGATGTGGATTTCTTTA
TCCCAGCTCCTACCACATTCTGACTATAAAATTCTGAAAAAATAGATTTT
AATCATTGCATTTGCTTGTCCACATTGAATTCCGAATCATTTTTCCACTT
TCCTCTTTTTGAAGTAACAAACAAAACTCCGCTAGGAACTTTAACAGTGT
ATGTTTCTCCCCTCGTTTTTAAAATAGCCGCCAAGTTATTTTTCACATGA
AATAGGGC
TCTTTGTTTTTTCTGNNNNCCGCCTGTTCGTCCACTTTANGTGACCTATA
NAATATCCGCGNAATTCTTCTCATCCACAGTGTGTTGGAAATCAGAATAT
ATATATAGAGATAGAGAGATAGAGAGAGAGAGAGAGAGATATAGATAGAT
ATANATAACNNANNANATTTTTCTNNTTTTTNCTATNNNTTCNNNNNTTN
TTNTNNNTTTTTTTTTTTTTNTTTTTNNNTTTTNTTNTTTATAACNAGTG
ANNTTTTTTCCTTCCTCTCACTGCNNAAGCCTCCGGGTTGCTCGCTCGGC
GCGGGGGGGGGGGGGNTNNNNNNNNTTNNNNNNNTNTTTTNNTNNTNNTT
TTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNTTTTTTNNNNNATTTTT
TTTTTTTTTTTTTTTTTTTTTCNCNNNTTTTTTTNNTTTNTTTTTTTTTT
TTTTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTNTNTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTNNTNCTNNTTTNCTTTTTTCCC
CNTTTTTTTTTTTTTCCTTTCTCTTCCCTCCCTCTTTTTTTNTTTTTTTN
CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTCTTCTCCTTTTTTTT
CCCTTTCTCTCCNTTCTCCTTTTCTCTCTTTTTTCCCCTCTTTTTTTCTT
TTTTCTCTTCCCCTTTTTTTCTNTTTTTTTNTTTCCCCTTTTTTTTTTTT
TTTTCTTTTCCCNCTTTTTCCNCCCATTTTNTTTTCTTTTTCTTTTTNTT
TTTTTTTTTTCTTTCTTTTTTTTTCTTTTNNNTTCCCCTCTTCCCCTCTC
CCACCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_l04.b1 MSMg01no341_l04.b1 CHROMAT_FILE:
MSMg01no341_l04.b1 PHD_FILE: MSMg01no341_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:01 2005
         (434 letters)



>mm_chr9_117432604_117433437
          Length = 834

 Score =  669 bits (346), Expect = 0.0
 Identities = 367/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctctataggaggggtatatatgactttcagatgtattattctagcatagtca 64
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 374 gaattctcctccataggaggggtatatatgacttccagatgtattattctagcatagtca 315

                                                                       
Query: 65  gagcgtgatgttgcatgcaatgtgaaacagggtgcacattccacaatccacccatctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagcgtgatgttgcatgcaatgtgaaacagggtgcacattccacaatccacccatctctc 255

                                                                       
Query: 125 ttcattcccaatatcttactttcatttttttactctccctccctccctctctcctccctc 184
           |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttcattcctaatctcttcctttcatttttttactctccctccctccctctctcctccctc 195

                                                                       
Query: 185 ccttcctccctcccctctctcccttccttgcttcttcctcttcctcctcctcctcctcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ccttcctccctcccctctctcccttccttgcttcttcctcttcctcctcctcctcctcct 135

                                                                       
Query: 245 cctccttcttcttcttcctcttcctcctcctctttttcattctttatgttaatctggaac 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 134 cctcctccttcttcttcctcttcctcctcctctttttcattctttatgttagtctggaac 75

                                                                       
Query: 305 actttatatagaccaggaggtccttaaactctgacaattctcctgcctctacccctcagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  actttatatagaccaggaggtccttaaactctgacaattctcctgcctctacccctcagg 15

                         
Query: 365 tgctgtgattgtag 378
           ||||||||||||||
Sbjct: 14  tgctgtgattgtag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)