Query= MSMg01no341_m13.b1 MSMg01no341_m13.b1 CHROMAT_FILE:
MSMg01no341_m13.b1 PHD_FILE: MSMg01no341_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:07 2005
(410 letters)
>mm_chr9_56793338_56794147
Length = 810
Score = 590 bits (305), Expect = e-173
Identities = 336/347 (96%), Gaps = 4/347 (1%)
Strand = Plus / Minus
Query: 67 tggcatatata-ccttttaaaaaaaacttaacaaagaaaaattctaactaactgaaagtg 125
||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tggcatacataccctttt-aaaaaaacttaacaaagaaaaattctaactaactgaaagtg 752
Query: 126 cttggacccacccagctttagtc--tttattttgagacagggtctggctctgtagcctat 183
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 751 cttggacccacccagctttagtctttttattttgagacagggtctggctctgtagcctat 692
Query: 184 gctgacctcaaactctgagcagccttcctggctccacatcccaatagctgggattacagg 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 691 gctgacctcaaactctgagcagccttcctgcctccacatcccaatagctgggattacagg 632
Query: 244 tgtattctaccacacctggcttcagctttgacatttataaaatcggggaaatctataata 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgtatgctaccacacctggcttcagctttgacatttataaaatcggggaaatctataata 572
Query: 304 tgtagcctagagcctatcacaagagtgacatccctttcctattccatactttgcatttca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgtagcctagagcctatcacaagagtgacatccctttcctattccatactttgcatttca 512
Query: 364 agtaagcctgatcaaccctgtcttgtactgggggataagggagaagg 410
||| ||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 511 agtgagcctgaccaatcctgccttgtactgggggataagggagaagg 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_m13.g1 MSMg01no341_m13.g1 CHROMAT_FILE:
MSMg01no341_m13.g1 PHD_FILE: MSMg01no341_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:07 2005
(325 letters)
>mm_chr9_56598923_56599647
Length = 725
Score = 567 bits (293), Expect = e-166
Identities = 317/325 (97%)
Strand = Plus / Plus
Query: 1 tatacccagccagactatcagccatgatgcgagacataacaaagacttccaagtaacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tatacccagccagactatcagccatgatgcgagacataacaaagacttccaagtagcatg 260
Query: 61 tctcctatgcaatacctttaggaactattaagaagaacacattcagtccaggaagcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcctatgcaatacctttaggaactattaagaagaacacattcagtccaggaagcctga 320
Query: 121 gatccaagaagagacctgatatctaaatccaaactggagcaagtcgaaaggtactttctc 180
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct: 321 gatccaagaagagacctgatatctaaatccaaactggagcaagtagcaaggcactttctc 380
Query: 181 aagaagataaaaccagccatacccagtggcttatactggttatcccagtactcaggaggc 240
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 381 aagaagataaaaccagccatacccagtggcttatgctggtcatcccagtactcaggaggc 440
Query: 241 aggaagatttcaaattcaaagacaacctacattacacagtaagacctggcctgaagtgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaagatttcaaattcaaagacaacctacattacacagtaagacctggcctgaagtgga 500
Query: 301 aaaggaaaaaagggggaggggtgat 325
|||| |||||| |||||||||||||
Sbjct: 501 aaagaaaaaaaaggggaggggtgat 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
