Query= MSMg01no342_a14.b1 MSMg01no342_a14.b1 CHROMAT_FILE:
MSMg01no342_a14.b1 PHD_FILE: MSMg01no342_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:27 2005
(484 letters)
>mm_chr9_36582264_36583147
Length = 884
Score = 857 bits (443), Expect = 0.0
Identities = 477/495 (96%), Gaps = 11/495 (2%)
Strand = Plus / Plus
Query: 1 ctctgctttctaaattttgagattaattgcatgcaccaccatgccacaacagctttaatt 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 190 ctctgctttctaaattttgagattaactgcatgcaccaccatgccacaacagctttaatt 249
Query: 61 tcttacgttcctatttctttttcattttaaactatttatactttgtgggtatagcaactt 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 250 tcttacgctcctatttctttttcattttaaactatttatactttgtgggtatagtaactt 309
Query: 121 ctta-----------aaacactagaatttacctttctcctcccacacccaaggacagggt 169
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cttatatttctgtgaaaacactagaatttacctttctcctcccacacccaaggacagggt 369
Query: 170 cctgaaatgtagccctaggtagcctggaacttgttacatagaccaggttggccttgaatc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cctgaaatgtagccctaggtagcctggaacttgttacatagaccaggttggccttgaatc 429
Query: 230 tgtagtaatctcctacccacttctccctcctgaattctgggtaggcatggttctccatac 289
||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct: 430 tgtagtaatctcctacccacttctccctcctgagttctggataggcatggatctccatac 489
Query: 290 ccagtttagaacttttgtttctataatcacttttctctccatggccatgtgttctgctgt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccagtttagaacttttgtttctataatcacttttctctccatggccatgtgttctgctgt 549
Query: 350 tcattttcaagtctcacttaatggagtatctggcccaggagggcagtaatcttacttggc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcattttcaagtctcacttaatggagtatctggcccaggagggcagtaatcttacttggc 609
Query: 410 ttaccaatactttgcaaatatctgacagaaagtgcccaattactcgttacatagtaatgc 469
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttaccaatactttacaaatatctgacagaaagtgcccaattactcgttacatagtaatgc 669
Query: 470 catcttcctcccacc 484
|||||||||||||||
Sbjct: 670 catcttcctcccacc 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_a14.g1 MSMg01no342_a14.g1 CHROMAT_FILE:
MSMg01no342_a14.g1 PHD_FILE: MSMg01no342_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:27 2005
(449 letters)
>mm_chr9_36732323_36733171
Length = 849
Score = 814 bits (421), Expect = 0.0
Identities = 448/467 (95%), Gaps = 18/467 (3%)
Strand = Plus / Minus
Query: 1 atactaaaggacctaataaaggagctacatagacaattctttctctctccgtctctctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 atactaaaggacctaataaaggagctacatagacaattctttctctctccgtctctctga 776
Query: 61 ctctgtgtctgtctctctgtctctctgtctgtgtctgtgtctctt------tctctctct 114
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 775 ctctgtgtctgtctctctgtctctctgtctgtgtctgtgtctctttctctctctctctct 716
Query: 115 ctctctgtgtgtgtgtgtgtg----------tg--tgtctgtctgtctgtctgtctgtgt 162
||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct: 715 ctctctgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtct 656
Query: 163 gtgtgtagatcaaaccccaggcctaatgaatgcttaggtgaatgttctgcccttgagtta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtgtgtagatcaaaccccaggcctaatgaatgcttaggtgaatgttctgcccttgagtta 596
Query: 223 gatccattttgtcctctagcctccttgagcaacttttttctaaataaaactgaacatttg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gatccattttgtcctctagcctccttgagcaacttttttctaaataaaactgaacatttg 536
Query: 283 aatgtactataaatggccagcaacaggaaactagttaaataaagcatgcatatggactca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aatgtactataaatggccagcaacaggaaactagttaaataaagcatgcatatggactca 476
Query: 343 tatgtgacaattgaaaataattctcatccattcaatatttattctatgtaaataaggtaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tatgtgacaattgaaaataattctcatccattcaatatttattctatgtaaataaggtaa 416
Query: 403 tgctgtgagccaattagatgtcacccctgtcttctcacagctctcag 449
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgctgtgagccaattagatgtcacccctgtcttctcacagctctcag 369
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
