BAC Information

Click to search

BAC

Clone NameMSMg01-342B07
Chromosome9 (Build37)
Map Location 59,918,209 - 59,918,678
singlet/doubletsinglet
Overlap geneThsd4
Upstream geneEG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342B07.T7 (MSMg01no342_b07.b1)MSMg01-342B07.TJ (MSMg01no342_b07.g1)
ACCAG455718AG455719
length740729
length of high quality
(start - end)
423 (32 - 454)470 (60 - 529)
definitionCHROMAT_FILE: MSMg01no342_b07.b1 PHD_FILE: MSMg01no342_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:30 2005CHROMAT_FILE: MSMg01no342_b07.g1 PHD_FILE: MSMg01no342_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTTC
TTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTT
CTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGAT
AGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACG
GTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTC
AATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTT
CCCTCTGTGCCCATATCTTGAAGGCTTTTCCCCACTTTCTCCTCTATAAG
TTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATCCACTTAGATTTGA
CCTTANTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACACGAT
AACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCA
CTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAAGTGTGTG
GTTTCATTTCTGGGTCTTCTATTTTATCCCCATGGTCCTATTGGCTGGCT
TCTATCTTGTATCTAGCCCTCTTTTATTTTTCCCGCTTTTTTTTTTTTTT
TTCTGCCTCGCTCCCGCCGTTACCTTTTCTTATTTTTTCCTCCCCTTGTT
AATACTTTTTTTTCCCTTCCCCTTTCTTTTTTATCTACCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCACTGAAATCATGGCTAGTTTTCACACTTGTCTTTCTGGG
GATGGAAACTTCCAGTTAGTATTTATGACTTAAGGAAAAACACCAGGCTT
CTTGGGAGATGTTATGGCCTGCTCTGAACACCTACTCTTTCAGGCTCGGA
TAGTCACCATGGAATTAGAGATAACTCCTCCTTATTCTCTCTTCTAACCA
TATACACATCCAATATGAACAGTTATTTCACTAGGTAATAAAGACATTGC
ACTTTACACATTCTCAGAAGGAAGGCATTTGGCTAAAATATTTAAACATG
AAGGCTCCTTTATACATCTTTCGAAGGATGGCTAAGAACAGGCCTATCTG
TCAAAGTCAATGTGTTCCATAACAACAATGCAGGTGGCAGCCAGATGAAT
AAGGCTCATGCTGGCAAAGTATTTCCTTTCTTTGGTAACTCTAATCCAAA
AGGTAGGGTAATGGCAGACATGACACCTGCCTGCTTGTGCTTCTCAGTGA
CCACACCAAGGATATGAACTTATAACAACCAATATCTGGGACATGTTAAC
CAGTTGGATAAATACTGATCCTTCACCTTCCTTGATGGAACCTTGACATT
CTTAATTTTCTCCCGCCCCTTCTTTAAAATCCTAAATATATTTATGAGCG
GTTTAAATCATTGCCCCCCATGTGGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_b07.g1 MSMg01no342_b07.g1 CHROMAT_FILE:
MSMg01no342_b07.g1 PHD_FILE: MSMg01no342_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:30 2005
         (470 letters)



>mm_chr9_59918009_59918878
          Length = 870

 Score =  878 bits (454), Expect = 0.0
 Identities = 466/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactgaaatcatggctagttttcacacttgtctttctggggatggaaacttccagttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactgaaatcatggctagttttcacacttgtctttctggggatggaaacttccagttag 260

                                                                       
Query: 61  tatttatgacttaaggaaaaacaccaggcttcttgggagatgttatggcctgctctgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |
Sbjct: 261 tatttatgacttaaggaaaaacaccaggcttcttgggagatgttatggcccactctgagc 320

                                                                       
Query: 121 acctactctttcaggctcggatagtcaccatggaattagagataactcctccttattctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctactctttcaggctcggatagtcaccatggaattagagataactcctccttattctc 380

                                                                       
Query: 181 tcttctaaccatatacacatccaatatgaacagttatttcactaggtaataaagacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttctaaccatatacacatccaatatgaacagttatttcactaggtaataaagacattg 440

                                                                       
Query: 241 cactttacacattctcagaaggaaggcatttggctaaaatatttaaacatgaaggctcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactttacacattctcagaaggaaggcatttggctaaaatatttaaacatgaaggctcct 500

                                                                       
Query: 301 ttatacatctttcgaaggatggctaagaacaggcctatctgtcaaagtcaatgtgttcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatacatctttcgaaggatggctaagaacaggcctatctgtcaaagtcaatgtgttcca 560

                                                                       
Query: 361 taacaacaatgcaggtggcagccagatgaataaggctcatgctggcaaagtatttccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 taacaacaatgcaggtggcagccagatgaataaggctcatgctggcagagtatttccttt 620

                                                             
Query: 421 ctttggtaactctaatccaaaaggtagggtaatggcagacatgacacctg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttggtaactctaatccaaaaggtagggtaatggcagacatgacacctg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)