Query= MSMg01no342_b10.b1 MSMg01no342_b10.b1 CHROMAT_FILE:
MSMg01no342_b10.b1 PHD_FILE: MSMg01no342_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:31 2005
(484 letters)
>mm_chr9_22604409_22605292
Length = 884
Score = 897 bits (464), Expect = 0.0
Identities = 473/476 (99%)
Strand = Plus / Plus
Query: 9 gaattcttttgtttccagtctcctggatacttgctttattctggattggatgtggatgaa 68
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 209 gaattcttttgattgcagtctcctggatacttgctttatcctggattggatgtggatgaa 268
Query: 69 ttctctttacccttcctgatcacagctcagatctgcttctcattattttagtaaacagct 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttctctttacccttcctgatcacagctcagatctgcttctcattattttagtaaacagct 328
Query: 129 cagatgactggatttttcatccagccgatggcaagagagcaaggaggaggaggactgggg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagatgactggatttttcatccagccgatggcaagagagcaaggaggaggaggactgggg 388
Query: 189 tttctgagtaggctgccggagccttctctttctgaggtctgtgtgtgttcacttggctct 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttctgagtaggctgccggagccttctctttctgaggtctgtgtgtgttcacttggctct 448
Query: 249 gggggagcctggaatgaaaagagcaagagtgtgctggtgtggagacctggctttgtaaac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gggggagcctggaatgaaaagagcaagagtgtgctggtgtggagacctggctttgtaaac 508
Query: 309 tccgcatggcatagcatttgtcttgatagttcaattcctttgaattgcattcaatatctt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tccgcatggcatagcatttgtcttgatagttcaattcctttgaattgcattcaatatctt 568
Query: 369 tggcagtattttctaccatttgaaaaagaaatgttttattgtattctcaaggacttaata 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tggcagtattttctaccatttgaaaaagaaatgttttattgtattctcaaggacttaata 628
Query: 429 gttaactttccctggtactaacttttaaaactccctgagaaagttggatggaaatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gttaactttccctggtactaacttttaaaactccctgagaaagttggatggaaatt 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_b10.g1 MSMg01no342_b10.g1 CHROMAT_FILE:
MSMg01no342_b10.g1 PHD_FILE: MSMg01no342_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:31 2005
(483 letters)
>mm_chr9_22766627_22767506
Length = 880
Score = 803 bits (415), Expect = 0.0
Identities = 467/485 (96%), Gaps = 7/485 (1%)
Strand = Plus / Minus
Query: 1 aatagtaaactgagcatttatcgtcaatggtctagcctggagatctttttttgtgactga 60
||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||
Sbjct: 680 aatagtaaactgagcatttatggtcaatggtctagtctggagatc-ttttttgtgactga 622
Query: 61 gaaatgcagtaacaatgtgactactgagagagagggtgaaataggccttctgggaaacat 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatgcagtaacaatgtgactactgatagagagggtgaaataggccttctgggaaacat 562
Query: 121 aaatctctcggacaagaggagctgaattcattattca-gcatttccgtgtaaaaactcat 179
||||||| ||||||||||||||||||||||||| || |||||||||||||||| || ||
Sbjct: 561 aaatctcccggacaagaggagctgaattcatta--catgcatttccgtgtaaaacctgat 504
Query: 180 caaaatgagcaaagcaatc-cgaagcgacacacagtgaacctgtgccatgccaagagctt 238
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caaaatgagcaaagcaatcac-aagcgacacacagtgaacctgtgccatgccaagagctt 445
Query: 239 gcatggttatacttcctacagggctataaactgtctgggaggaaaaaagagaagcaaaac 298
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 gcatggttatacttcctacagggctataaactgtctgggagg-aaaaagagaagcaaaac 386
Query: 299 aacaaaagaaaggaagaaaagggaaacaaatggaccgttcacatgtctggattgaatctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 aacaaaagaaaggaagaaaagggaaacaaatggaccgttcacatgtctggattgagtctc 326
Query: 359 agtctgttgcatgaggaactaattacctccagtttcagaaatggccttttgctttgcttt 418
|| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 agcccgttgcatgaggaactaattacctccagtttcagaactggccttttgctttgcttt 266
Query: 419 cagtttgaggtggttgtggctggatatcttcttgcattgaactagcaggccttccccctt 478
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtttgaggtggtagtggctggatatcttcttgcattgaactagcaggccttccccctt 206
Query: 479 tgtag 483
|||||
Sbjct: 205 tgtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 880
Length adjustment: 10
Effective length of query: 473
Effective length of database: 870
Effective search space: 411510
Effective search space used: 411510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
