BAC Information

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BAC

Clone NameMSMg01-342E11
Chromosome9 (Build37)
Map Location 26,046,942 - 26,047,176
singlet/doubletsinglet
Overlap genenone
Upstream gene9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342E11.T7 (MSMg01no342_e11.b1)MSMg01-342E11.TJ (MSMg01no342_e11.g1)
ACCAG455869AG455870
length734752
length of high quality
(start - end)
244 (59 - 302)414 (65 - 478)
definitionCHROMAT_FILE: MSMg01no342_e11.b1 PHD_FILE: MSMg01no342_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:45 2005CHROMAT_FILE: MSMg01no342_e11.g1 PHD_FILE: MSMg01no342_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGAGTT
TCTGGAAAGTTTCTAGCATAATTTAGGCAATGGTTCAATATGTTCCCCAA
AGTACAAATCTATTTTGTACAAATTAAAAATCAACATGAAAATATAAAAC
CCGAACTGCATGAACACTTGTAGTATTTAATAAACAGGCAGTTGGTATGG
AGAATGACATTAAGTTTCCACTGAGTGACTGATATGGGGAGCAGTCAGTT
AACTGCCCCCTTCAGTCTACTTATCTGAAAGTAGAATAGGAATAATTCTT
GACTTTTTTTGATTGTGATAAGAAGCAAAAGAGTGAACCCAGTAAATGCA
TAAGACATTGTATAGATGGCTGTCATAGTGGTAGGGACAGGCAGATCTCT
ATGAGTTTGAGGTCAGCCTGGTCAACAAAAGTGACTTTCAGGCCAGCCAA
TATTATATAGTAAGACTCTGTCTCANACAAAACAAAACAAACACAAATCC
TCAAAAACTTACTACATTAATCAAATACACACCCAGTAGCAAAACATGTC
ACATTTACTGAAGAGTATAAATATCCTTAATCCTACCAGACTTAATCGTT
TAAACAACACAAAATGGCGGGCTTATGAAAATGCTTCCCTCCCTCCTGTT
CGTAGAAAGAAACGCGCCTTTTCCTAAAACCCCCTTGGATTTTCCAAAAG
ACCCCAACTTTTTTTTTTCGTCATACTTCCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGATATGC
TTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGACTGG
GCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGTTTCTG
TTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAATT
AGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTT
ACCCTCAATCAGCAGGCGTGGGAGACAAGCTCTTTCCTCTGAGTTTCAGT
GGTCAGAGCAGTTTCTGCAGGCAAGCTCTCCTCTTTCGGGGAAGGTGTAC
AGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCATAAC
AGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGTAAGGTGGCCGGTTG
TCTGGAGTCCAAGATGTCGCCGCCTCAAAGCTCTGTGGTTCTCCCCAAGT
AAGTGGCCGGTTGTCTGCGCACCCATTATGTTTCTCCCTCCTAACCTCTG
TGTTTCTCTCCCTGTAAGTTGGTTTTTTTTTTTCCCCCTTACATTTCTTC
TTCCTTTCACTTTTTCCCTCTTTCCCCCTCATTCTTCCTCCTTTTTTTTT
TCCTTTCTCTCTCCTTTTTCTCTCTCCCCCCCCGATTTTTTTTTTTTCTT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_e11.b1 MSMg01no342_e11.b1 CHROMAT_FILE:
MSMg01no342_e11.b1 PHD_FILE: MSMg01no342_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:45 2005
         (244 letters)



>mm_chr9_26046737_26047380
          Length = 644

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   tagcataatttaggcaatggttcaatatgttccccaaagtacaaatctattttgtacaaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagcataatttaggcaatggttcaatatgttccccaaagtacaaatctattttgtacaaa 381

                                                                       
Query: 66  ttaaaaatcaacatgaaaatataaaacccgaactgcatgaacacttgtagtatttaataa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaaaaatcaacatgaaaatataaaacccgaactgcatgaacacttgtagtatttaataa 321

                                                                       
Query: 126 acaggcagttggtatggagaatgacattaagtttccactgagtgactgatatggggagca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acaggcagttggtatggagaatgacattaagtttccactgagtgactgatatggggagca 261

                                                                  
Query: 186 gtcagttaactgcccccttcagtctacttatctgaaagtagaataggaataattc 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 260 gtcagttaactgcccccttcagtctacttatctgaaagtagcataggaataattc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)