MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-342J09
Chromosome	9 (Build37)
Map Location	60,126,760 - 60,127,165
singlet/doublet	singlet
Overlap gene	Thsd4
Upstream gene	Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream gene	LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
Link	Open Mouse BAC browser

Click to get alignment info.

name	Adpgk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72141 MGI:1919391
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bbs4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102774 MGI:2143311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arih1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23806 MGI:1344363
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC621119 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621119
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 46 ESTs, 4 Proteins pseudo : _no_value

name	4930425N13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73893 MGI:1921143
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hexa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15211 MGI:96073
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Brunol6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76183 MGI:1923433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Parp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67287 MGI:1914537
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pkm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18746 MGI:97591
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933407I18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71121 MGI:1918371
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gramd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546134 MGI:3528937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Senp8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71599 MGI:1918849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myo9a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270163 MGI:107735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 3 Proteins

name	EG665385 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665385 MGI:3647731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 127 ESTs, 8 Proteins pseudo : _no_value

name	LOC100040361 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040361
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Nr2e3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23958 MGI:1346317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665389 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665389 MGI:3647735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Thsd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207596 MGI:2672033
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100039792 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	EG384942 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384942 MGI:3648610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Lrrc49 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102747 MGI:2442689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Larp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67557 MGI:1914807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040447 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Uaca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72565 MGI:1919815
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	ENSMUSG00000052143 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:791387 MGI:3642719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	A430102L10 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:330956
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Adpgk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70780371 GeneID:72141 MGI:1919391
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-dependent glucokinase transcript_id : NM_028121.2

name	Bbs4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341606 GeneID:102774 MGI:2143311
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bardet-Biedl syndrome 4 homolog (human) transcript_id : NM_175325.2

name	Arih1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930388 GeneID:23806 MGI:1344363
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) transcript_id : NM_019927.1

name	4930425N13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341615 GeneID:73893 MGI:1921143
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930425N13 gene transcript_id : NM_178388.2

name	Hexa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374209 GeneID:15211 MGI:96073
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hexosaminidase A transcript_id : NM_010421.4

name	Brunol6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328408 GeneID:76183 MGI:1923433
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bruno-like 6, RNA binding protein (Drosophila) transcript_id : NM_175235.3

name	Parp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112807188 GeneID:67287 MGI:1914537
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poly (ADP-ribose) polymerase family, member 6 transcript_id : NM_029922.2

name	Pkm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981561 GeneID:18746 MGI:97591
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pyruvate kinase, muscle transcript_id : NM_011099.2

name	4933407I18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352565 GeneID:71121 MGI:1918371
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933407I18 gene transcript_id : NM_001033160.2

name	Gramd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85702036 GeneID:546134 MGI:3528937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GRAM domain containing 2 transcript_id : NM_001033498.1

name	Senp8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402515 GeneID:71599 MGI:1918849
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SUMO/sentrin specific peptidase 8 transcript_id : NM_027838.2

name	Myo9a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386154 GeneID:270163 MGI:107735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 3 Proteins product : myosin IXa, transcript variant 2 transcript_id : XM_981204.1

name	Nr2e3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892966 GeneID:23958 MGI:1346317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 2, group E, member 3 transcript_id : NM_013708.4

name	EG665389 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386158 GeneID:665389 MGI:3647735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG665389 transcript_id : XM_976601.1

name	Thsd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351523 GeneID:207596 MGI:2672033
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thrombospondin, type I, domain containing 4 transcript_id : NM_001040426.2

name	Thsd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361124 GeneID:207596 MGI:2672033
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thrombospondin, type I, domain containing 4 transcript_id : NM_172444.2

name	LOC100039792 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259994 GeneID:100039792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100039792 transcript_id : XM_001473511.1

name	EG384942 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386160 GeneID:384942 MGI:3648610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG384942 transcript_id : XM_357952.4

name	Lrrc49 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370683 GeneID:102747 MGI:2442689
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 49 transcript_id : NM_145616.3

name	Larp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372822 GeneID:67557 MGI:1914807
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : La ribonucleoprotein domain family, member 6 transcript_id : NM_026235.3

name	LOC100040447 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260010 GeneID:100040447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100040447 transcript_id : XM_001475271.1

name	Uaca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130474 GeneID:72565 MGI:1919815
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uveal autoantigen with coiled-coil domains and ankyrin repeats transcript_id : NM_028283.2

name	ENSMUSG00000052143 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260012 GeneID:791387 MGI:3642719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : predicted gene, ENSMUSG00000052143 transcript_id : XM_001475287.1

name	A430102L10 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259996 GeneID:330956
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein A430102L10 transcript_id : XM_001473612.1

name	Adpgk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312406 CCDS:CCDS23248.1 GeneID:72141 MGI:1919391
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006006 - glucose metabolism [Evidence IEA]; GO:0006096 - glycolysis [Evidence IEA] codon_start : 1 product : ATP-dependent glucokinase protein_id : NP_082397.1

name	Bbs4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789423 GeneID:102774 MGI:2143311
definition	GO_component : GO:0005813 - centrosome [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0030534 - adult behavior [Evidence IMP]; GO:0016358 - dendrite development [Evidence IMP]; GO:0000226 - microtubule cytoskeleton organization and biogenesis [Evidence IMP]; GO:0001843 - neural tube closure [Evidence IMP]; GO:0045724 - positive regulation of flagellum biogenesis [Evidence IMP]; GO:0019216 - regulation of lipid metabolism [Evidence IMP]; GO:0001895 - retinal homeostasis [Evidence IMP]; GO:0035058 - sensory cilium biogenesis [Evidence IMP]; GO:0007608 - sensory perception of smell [Evidence IMP] codon_start : 1 product : Bardet-Biedl syndrome 4 homolog protein_id : NP_780534.1

name	Arih1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930389 GeneID:23806 MGI:1344363
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IPI] codon_start : 1 note : ariadne 1 product : ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 protein_id : NP_064311.1

name	4930425N13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30409994 CCDS:CCDS23249.1 GeneID:73893 MGI:1921143
definition	codon_start : 1 product : hypothetical protein LOC73893 protein_id : NP_848475.1

name	Hexa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67514549 CCDS:CCDS23250.1 GeneID:15211 MGI:96073
definition	GO_component : GO:0005764 - lysosome [Evidence IDA]; GO:0016020 - membrane [Evidence IDA] GO_function : GO:0004563 - beta-N-acetylhexosaminidase activity [Evidence IDA] [Evidence IMP] [Evidence IGI]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0046982 - protein heterodimerization activity [Evidence ISS] GO_process : GO:0007628 - adult walking behavior [Evidence IMP]; GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006689 - ganglioside catabolism [Evidence IMP]; GO:0030203 - glycosaminoglycan metabolism [Evidence IGI]; GO:0007626 - locomotory behavior [Evidence IGI]; GO:0007040 - lysosome organization and biogenesis [Evidence IGI] [Evidence IMP]; GO:0008152 - metabolism [Evidence IEA]; GO:0042552 - myelination [Evidence IGI]; GO:0050885 - regulation of balance [Evidence IGI]; GO:0050884 - regulation of posture [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IGI]; GO:0019915 - sequestering of lipid [Evidence IMP]; GO:0019953 - sexual reproduction [Evidence IMP]; GO:0001501 - skeletal development [Evidence IGI] codon_start : 1 product : hexosaminidase A protein_id : NP_034551.2

name	Brunol6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328409 CCDS:CCDS23251.1 GeneID:76183 MGI:1923433
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : bruno-like 6, RNA binding protein protein_id : NP_780444.2

name	Parp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112807189 GeneID:67287 MGI:1914537
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003950 - NAD+ ADP-ribosyltransferase activity [Evidence IEA] GO_process : GO:0006471 - protein amino acid ADP-ribosylation [Evidence IEA] codon_start : 1 product : poly (ADP-ribose) polymerase family, member 6 protein_id : NP_084198.2

name	Pkm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981562 GeneID:18746 MGI:97591
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004743 - pyruvate kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA] GO_process : GO:0006096 - glycolysis [Evidence IEA] codon_start : 1 product : pyruvate kinase 3 protein_id : NP_035229.2

name	4933407I18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701664 GeneID:71121 MGI:1918371
definition	codon_start : 1 product : hypothetical protein LOC71121 protein_id : NP_001028332.1

name	Gramd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702037 GeneID:546134 MGI:3528937
definition	codon_start : 1 note : CG3304-PA-like product : GRAM domain containing 2 protein_id : NP_001028670.1

name	Senp8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46395462 CCDS:CCDS23254.1 GeneID:71599 MGI:1918849
definition	GO_function : GO:0008234 - cysteine-type peptidase activity [Evidence IEA] [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0019784 - NEDD8-specific protease activity [Evidence ISS]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : protease, cysteine, 2 (NEDD8 specific); SUMO/sentrin specific protease family member 8 product : SUMO/sentrin specific protease 8 protein_id : NP_082114.1

name	Myo9a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386155 GeneID:270163 MGI:107735
definition	codon_start : 1 product : myosin IXa isoform 2 protein_id : XP_986298.1

name	Nr2e3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305323 CCDS:CCDS23255.1 GeneID:23958 MGI:1346317
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0045872 - positive regulation of rhodopsin gene activity [Evidence IGI]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0002073 - retina development (sensu Mammalia) [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : retinal degeneration 7 product : photoreceptor-specific nuclear receptor protein_id : NP_038736.1

name	EG665389 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386159 GeneID:665389 MGI:3647735
definition	codon_start : 1 product : hypothetical protein protein_id : XP_981695.1

name	Thsd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94536769 GeneID:207596 MGI:2672033
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1 product : thrombospondin, type I, domain containing 4 isoform a protein_id : NP_001035516.1

name	Thsd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369599 CCDS:CCDS23256.1 GeneID:207596 MGI:2672033
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : thrombospondin, type I, domain containing 4 isoform b protein_id : NP_766032.1

name	LOC100039792 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259995 GeneID:100039792
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473561.1

name	EG384942 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386161 GeneID:384942 MGI:3648610
definition	codon_start : 1 product : hypothetical protein protein_id : XP_357952.4

name	Lrrc49 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981832 CCDS:CCDS23257.1 GeneID:102747 MGI:2442689
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : leucine rich repeat containing 49 protein_id : NP_663591.2

name	Larp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981025 CCDS:CCDS23258.1 GeneID:67557 MGI:1914807
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006405 - RNA export from nucleus [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 product : acheron protein_id : NP_080511.2

name	LOC100040447 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260011 GeneID:100040447
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475321.1

name	Uaca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28077007 CCDS:CCDS23259.1 GeneID:72565 MGI:1919815
definition	GO_component : GO:0043293 - apoptosome [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005829 - cytosol [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0048471 - perinuclear region [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008630 - DNA damage response, signal transduction resulting in induction of apoptosis [Evidence IMP]; GO:0008631 - induction of apoptosis by oxidative stress [Evidence IMP]; GO:0050728 - negative regulation of inflammatory response [Evidence IMP]; GO:0042347 - negative regulation of NF-kappaB import into nucleus [Evidence IMP]; GO:0043065 - positive regulation of apoptosis [Evidence IMP] [Evidence IDA]; GO:0043280 - positive regulation of caspase activity [Evidence IMP] [Evidence IDA]; GO:0042307 - positive regulation of protein import into nucleus [Evidence IMP]; GO:0009411 - response to UV [Evidence IMP] codon_start : 1 product : nuclear membrane binding protein NUCLING protein_id : NP_082559.1

name	ENSMUSG00000052143 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260013 GeneID:791387 MGI:3642719
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475337.1

name	A430102L10 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259997 GeneID:330956
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473662.1

name	LOC100040361 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040361
definition	number : 1 pseudo : _no_value

name	LOC621119 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260005 GeneID:621119
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 46 ESTs, 4 Proteins product : similar to ribosomal protein S11 pseudo : _no_value transcript_id : XR_031940.1

name	EG665385 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149259992 GeneID:665385 MGI:3647731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 127 ESTs, 8 Proteins product : predicted gene, EG665385 pseudo : _no_value transcript_id : XR_001723.2

clone name	MSMg01-294L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114C13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-288F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529G10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-500G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528M07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-487I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313C23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-342J09.T7 (MSMg01no342_j09.b1)	MSMg01-342J09.TJ (MSMg01no342_j09.g1)
ACC	AG456103	AG456104
length	807	731
length of high quality (start - end)	265 (34 - 298)	406 (61 - 466)
definition	CHROMAT_FILE: MSMg01no342_j09.b1 PHD_FILE: MSMg01no342_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:08 2005	CHROMAT_FILE: MSMg01no342_j09.g1 PHD_FILE: MSMg01no342_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:08 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATATG TACGTGTATATATGAGTGTTTGCATGTACGTATGCATATGACCACATGAA TGCAGTGCCCACAGAGGTCAGAGGAGGGTACCAGATCCCCAGGACCTGGG GGAATGAATGGTTATGAACCAGGTGGGTGCTAGGAACTTAATTATTCCTG TGCAAGAGCAGCAAGCACTCTTAACCACTGAGTCACCTCTCCAGCTCCAG TGTGTATGATTATTTTGGAGGGAAGGGAGGGTGTTAGAGACAGAGNTTCT CTGTTTTTTTTTTTGTNTGNACNCCAGGCTGGCCTCGATCTCGCAGATAT CTGCTTCTCCTCCCCAGTGCTGGTACCTTTTTTGTTTGTATTCTAATGCA GGCGCCTCCATTGATTATATTTCTTCATTTCCTTACTTATCTTTTTTTTT GTGTTTAACTTTTCTCCTCCGTTACTCTTCCATCTCTGATTTTCTTCTTT TCCCTTTTTCTTTCTCATCATGACCCCCGTATATTTTCTCCTTATTTCCC CCCCCCTATCTTTTTTTTTTTATTTATTTTCTTACTAAATTTATATTGAT GTTGTTACTCCGCCTTCCGCCTTTTCCTTACTTCCTCTCTCATTTTTTAC CCCTTTACTCCTCTCCTCTTTATTATTCCCCCCTTCTATCATTTTATTTT ATTTCCCCACCCCTTCCCGCCACTTTCCCTTTCTTTTTTTTTATCTCCCC AACACTCATTCTCATCTACTTTTCCTCACGCCCTCCTTCTACTCTAACCT ATTCCTT	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAA AGGTGTGCGCCACCAAGCCCGGCTGACCTCCCCAGACTTGATTAGCTGTT TCTGACTCTGCCCCCTCTCAGCCTGTGCTCCACACTTCCTGTGTCTGCTG GTCCCGGGGTTTGCGTTTCTCTTACCCTCAGCCTCGTACAGTGTTCACAT GTGTAGCTTGGCTCTTTACCAGCCCTGCAGTGGAGAAGACAGCGTTCTTC CCACCAGATTTGTTGTGTAGGAGAAGGAGTCCATAGGAGATCGTTTCTCA CTGCCACAGCCATCCCAGCAGACCGCAGGAGAGGGGAGACTGAAGGAAGG AGCTATGGACGACCCTCAGGAAATGTCTGCATTGGGGGAAAAGAAGAGGA GTGGAGGTGGTGGTCATAAAGCATGAGGCCACGGTTGCTGATAGGGACGG TATATTAAAGGGGACCTGATGAAGTTGTGTCATGTGTCCACGGACAAACC TAAAGTCTGCGGTTTTAAGATACGTGTTGGATTGGCAACACTTCCCTGTA CCTCTCTCTAAAAAATTTCCTGTGATATATCAAGCTCTTTTTCGCTTTAT ACATCACCCCATCCCTATTTTCCTCACATTCTTCTGATTTAATTATTACA TCCCTTATTTTTTTACCTCCCTTATTTTTTT
quality values	Open. Hide. 13 15 19 17 17 9 9 9 14 19 33 33 59 30 30 28 20 14 10 16 10 12 12 9 9 9 24 15 18 18 19 22 28 29 37 59 59 53 53 53 33 33 33 33 37 33 24 21 10 11 10 11 10 11 11 23 23 40 59 59 50 50 48 47 53 53 53 53 53 53 53 53 53 53 53 53 57 57 59 59 59 68 68 68 68 68 54 54 57 68 68 68 68 68 68 51 50 51 68 68 53 54 54 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 46 46 46 48 50 50 50 50 57 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 57 57 54 54 54 57 57 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 59 59 57 57 57 57 48 48 48 59 59 59 59 59 59 59 59 43 39 32 34 34 40 40 37 37 30 28 20 20 3 0 3 23 23 39 19 19 10 9 8 9 19 14 14 18 22 21 16 11 11 3 0 3 3 0 3 3 0 3 15 10 12 15 21 24 32 26 25 19 15 15 13 18 15 15 27 26 26 21 12 11 9 13 13 10 12 11 12 9 10 10 8 8 8 19 24 25 25 12 12 11 11 11 11 11 11 11 8 8 8 8 10 10 15 11 8 8 8 8 9 10 10 8 9 8 8 8 8 8 8 10 10 13 10 8 8 8 8 8 8 8 8 10 10 9 9 9 12 8 8 6 6 8 6 8 8 8 8 8 8 8 10 10 13 11 10 10 8 8 6 6 8 6 8 8 8 8 10 16 13 13 10 10 8 10 6 6 8 8 13 12 14 15 18 18 11 11 11 16 12 12 9 8 8 8 6 8 8 9 9 10 15 15 11 10 8 6 6 8 8 8 8 8 8 8 8 11 13 11 11 15 11 14 10 11 13 10 10 10 13 14 13 10 10 9 9 8 8 6 6 8 10 12 13 10 10 10 10 10 10 10 14 10 10 10 9 9 9 9 19 11 12 10 8 8 8 8 8 8 9 11 15 16 16 24 23 26 21 15 15 15 13 15 10 10 10 10 10 12 15 15 19 19 15 8 8 6 6 12 8 10 8 12 10 10 10 8 8 8 12 16 15 11 10 9 8 8 8 8 8 8 8 10 10 8 8 8 8 9 11 9 9 11 8 8 6 6 8 8 10 8 9 9 9 8 8 10 10 11 12 14 11 13 10 10 10 10 9 9 9 10 11 10 10 8 10 11 10 8 13 10 7 8 6 6 8 8 12 11 13 9 9 8 8 10 10 10 8 10 12 12 9 11 11 11 11 9 8 8 6 7 11 10 20 21 15 10 8 10 6 6 6 7 7 8 8 8 11 12 9 9 9 9 11 14 14 12 13 13 10 7 8 6 6 8 8 11 9 21 21 14 15 10 10 8 8 8 9 15 15 15 8 8 8 8 8 8 9 10 13 13 18 18 19 13 15 10 10 10 11 11 15 10 8 8 8 8 8 8 8 8 11 8 9 10 10 13 8 8 8 8 8 8 8 9 18 18 12 9 10 8 8 8 8 8 10 11 10 10 10 10 19 9 9 9 9 10 10 8 8 8 8 8 8 8 8 8 13 11 10 10 10	Open. Hide. 24 24 30 31 39 39 39 37 37 39 37 39 41 37 37 28 25 11 10 10 13 13 10 19 10 10 10 21 21 48 50 48 43 37 43 42 42 47 48 57 57 57 50 43 34 24 22 29 28 41 41 42 43 44 42 50 50 50 50 50 50 50 50 50 50 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 42 50 50 50 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 40 40 28 37 37 35 34 57 44 42 39 39 43 57 47 46 42 37 32 32 39 39 34 44 47 47 54 48 46 48 48 48 43 43 43 42 43 43 43 48 42 48 48 48 48 48 39 39 39 39 39 39 39 39 39 37 37 41 39 39 41 32 32 30 18 17 26 29 37 39 41 41 41 32 26 20 20 20 21 17 17 17 16 20 20 27 28 30 34 31 31 37 13 13 9 9 12 9 9 9 12 12 12 11 15 15 19 18 12 17 12 12 12 17 17 12 10 10 11 11 15 10 10 10 10 11 10 10 10 11 8 8 8 8 8 8 9 11 12 15 15 12 12 12 10 10 10 16 17 10 14 11 13 11 11 8 15 13 8 8 8 10 12 12 11 11 12 8 10 8 6 6 6 6 10 13 10 12 6 6 8 6 6 7 6 10 8 8 7 7 9 10 10 15 16 11 11 11 11 11 10 11 10 10 13 15 10 10 10 10 16 12 8 8 8 8 8 8 8 8 8 8 11 10 10 8 8 8 8 10 9 12 10 10 9 10 9 9 9 10 12 9 9 8 8 8 9 9 9 9 10 8 10 8 8 8 12 8 8 8 13 10 10 10 11 10 11 11 11 11 22 11 8 6 6 8 8 8 8 8 8 10 8 8 6 6 6 10 10 8 8 6 6 8 8 8 8 8 9 9 9 9 10 9 9 9 9 9 9 12 19 18 17 12 12 8 6 6 6 10 6 8 8 10 9 9 9 9 9 8 8 8 8 8 8 10 10 10 10 8 10 10 10 10 8 8 8 10 12 12 11 9 8 8 8 8 9 9 14 14 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no342_j09.g1 MSMg01no342_j09.g1 CHROMAT_FILE:
MSMg01no342_j09.g1 PHD_FILE: MSMg01no342_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:08 2005
         (406 letters)



>mm_chr9_60126496_60127301
          Length = 806

 Score =  739 bits (382), Expect = 0.0
 Identities = 400/406 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaatccacctgcctctgcctcccgagtgctgggattaaaggtgtgcgccaccaagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 670 agaaatccacctgcctctgcctcccgagtgctgggattaaaggtgtgtgccaccaagccc 611

                                                                       
Query: 61  ggctgacctccccagacttgattagctgtttctgactctgccccctctcagcctgtgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggctgacctccccagacttgattagctgtttctgactctgccccctctcagcctgtgctc 551

                                                                       
Query: 121 cacacttcctgtgtctgctggtcccggggtttgcgtttctcttaccctcagcctcgtaca 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cacactgcctgtgtctgctggtcccggggtttgcgtttctcttaccctcagcctcgtaca 491

                                                                       
Query: 181 gtgttcacatgtgtagcttggctctttaccagccctgcagtggagaagacagcgttcttc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 490 gtgttcacatgtgtagcttggctctttaccagccctgcaatggagaagacagcgttcttc 431

                                                                       
Query: 241 ccaccagatttgttgtgtaggagaaggagtccataggagatcgtttctcactgccacagc 300
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 430 ccaccagatttgttgtgtagaagaaggagcccataggagatcgtttctcactgccacagc 371

                                                                       
Query: 301 catcccagcagaccgcaggagaggggagactgaaggaaggagctatggacgaccctcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 catcccagcagaccgcaggagaggggagactgaaggaaggagctatggacgaccctcagg 311

                                                         
Query: 361 aaatgtctgcattgggggaaaagaagaggagtggaggtggtggtca 406
           |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 310 aaatgtctgcattgggggaaaagaagaggaatggaggtggtggtca 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information