MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-343E17
Chromosome	9 (Build37)
Map Location	71,128,567 - 71,128,957
singlet/doublet	singlet
Overlap gene	Aldh1a2
Upstream gene	Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660
Downstream gene	Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4
Link	Open Mouse BAC browser

Click to get alignment info.

name	Myo1e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71602 MGI:106621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccnb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12442 MGI:88311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf111 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93836 MGI:1934919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sltm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66660 MGI:1913910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	B230380D07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235461 MGI:2443086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adam10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11487 MGI:109548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cycs-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13064 MGI:109500
definition	note : cytochrome c, pseudogene 1 pseudo : _no_value

name	Lipc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15450 MGI:96216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041622 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 416 ESTs, 5 Proteins

name	LOC100041628 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein

name	Aqp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64008 MGI:1891066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700020I22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72262 MGI:1919512
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100041660 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041660
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Aldh1a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19378 MGI:107928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grinl1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28015 MGI:107282
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AA407270 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102371 MGI:2142908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC547043 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100040537 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040537
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Cgnl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68178 MGI:1915428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcf12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21406 MGI:101877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666001 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666001 MGI:3648255
definition	note : predicted gene, EG666001 pseudo : _no_value

name	LOC665959 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins pseudo : _no_value

name	EG665964 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665964 MGI:3644625
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 617 ESTs, 15 Proteins

name	LOC665970 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665970
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 20 Proteins pseudo : _no_value

name	Suhw4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235469 MGI:2384583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myo1e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68299823 GeneID:71602 MGI:106621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin IE transcript_id : NM_181072.3

name	Ccnb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86198317 GeneID:12442 MGI:88311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin B2 transcript_id : NM_007630.2

name	Rnf111 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130811 GeneID:93836 MGI:1934919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger 111 transcript_id : NM_033604.2

name	Sltm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62243851 GeneID:66660 MGI:1913910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SAFB-like, transcription modulator transcript_id : NM_026337.1

name	Sltm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130289 GeneID:66660 MGI:1913910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SAFB-like, transcription modulator transcript_id : NM_025690.3

name	B230380D07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118403315 GeneID:235461 MGI:2443086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230380D07 gene transcript_id : NM_172772.2

name	Adam10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354069 GeneID:11487 MGI:109548
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 10 transcript_id : NM_007399.2

name	Lipc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982277 GeneID:15450 MGI:96216
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipase, hepatic transcript_id : NM_008280.2

name	LOC100041622 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260061 GeneID:100041622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 416 ESTs, 5 Proteins product : similar to RIKEN cDNA 1110014J01 gene transcript_id : XM_001477924.1

name	LOC100041628 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260063 GeneID:100041628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein product : hypothetical protein LOC100041628 transcript_id : XM_001477950.1

name	Aqp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542135 GeneID:64008 MGI:1891066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aquaporin 9 transcript_id : NM_022026.2

name	1700020I22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260065 GeneID:72262 MGI:1919512
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700020I22 gene transcript_id : XM_980183.2

name	LOC100041660 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260066 GeneID:100041660
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100041660 transcript_id : XM_001478002.1

name	Aldh1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227213 GeneID:19378 MGI:107928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldehyde dehydrogenase family 1, subfamily A2 transcript_id : NM_009022.3

name	Grinl1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142359777 GeneID:28015 MGI:107282
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A transcript_id : NM_178602.2

name	AA407270 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350194 GeneID:102371 MGI:2142908
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AA407270 transcript_id : NM_001033208.2

name	Cgnl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56550078 GeneID:68178 MGI:1915428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cingulin-like 1 transcript_id : NM_026599.4

name	Tcf12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370916 GeneID:21406 MGI:101877
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor 12 transcript_id : NM_011544.2

name	EG665964 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260016 GeneID:665964 MGI:3644625
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 617 ESTs, 15 Proteins product : predicted gene, EG665964 transcript_id : XM_980604.2

name	Suhw4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110835724 GeneID:235469 MGI:2384583
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of hairy wing homolog 4 (Drosophila) transcript_id : NM_146224.4

name	Myo1e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68299824 GeneID:71602 MGI:106621
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : molecular motor product : myosin IE protein_id : NP_851417.2

name	Ccnb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86198318 CCDS:CCDS23320.1 GeneID:12442 MGI:88311
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 product : cyclin B2 protein_id : NP_031656.2

name	Rnf111 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15809022 CCDS:CCDS23321.1 GeneID:93836 MGI:1934919
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007389 - pattern specification [Evidence IMP] codon_start : 1 product : ring finger 111 protein_id : NP_291082.1

name	Sltm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62243815 CCDS:CCDS23322.1 GeneID:66660 MGI:1913910
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; modulator of estrogen induced transcription product : modulator of estrogen induced transcription isoform a protein_id : NP_079966.2

name	Sltm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62243852 GeneID:66660 MGI:1913910
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; modulator of estrogen induced transcription product : modulator of estrogen induced transcription isoform b protein_id : NP_080613.1

name	B230380D07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118403316 GeneID:235461 MGI:2443086
definition	codon_start : 1 product : hypothetical protein LOC235461 protein_id : NP_766360.2

name	Adam10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680638 CCDS:CCDS23323.1 GeneID:11487 MGI:109548
definition	GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0005798 - Golgi-associated vesicle [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0004175 - endopeptidase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0019901 - protein kinase binding [Evidence IDA]; GO:0005102 - receptor binding [Evidence ISS]; GO:0042169 - SH2 domain binding [Evidence NAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007267 - cell-cell signaling [Evidence ISS]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0006509 - membrane protein ectodomain proteolysis [Evidence ISS]; GO:0007162 - negative regulation of cell adhesion [Evidence ISS]; GO:0007220 - Notch receptor processing [Evidence NAS]; GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0006913 - nucleocytoplasmic transport [Evidence NAS]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 exception : mismatches in translation note : a disintegrin and metalloprotease domain (ADAM) 10 product : a disintegrin and metalloprotease domain 10 protein_id : NP_031425.1

name	Lipc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982278 CCDS:CCDS23324.1 GeneID:15450 MGI:96216
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016298 - lipase activity [Evidence IDA]; GO:0005319 - lipid transporter activity [Evidence IEA]; GO:0004806 - triacylglycerol lipase activity [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : hepatic lipase product : lipase, hepatic protein_id : NP_032306.2

name	LOC100041622 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260062 GeneID:100041622
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477974.1

name	LOC100041628 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260064 GeneID:100041628
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478000.1

name	Aqp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11528512 CCDS:CCDS23325.1 GeneID:64008 MGI:1891066
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA]; GO:0015250 - water channel activity [Evidence TAS] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0006833 - water transport [Evidence TAS] codon_start : 1 product : aquaporin 9 protein_id : NP_071309.1

name	1700020I22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386215 GeneID:72262 MGI:1919512
definition	codon_start : 1 product : hypothetical protein LOC72262 protein_id : XP_985277.1

name	LOC100041660 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260067 GeneID:100041660
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478052.1

name	Aldh1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677665 GeneID:19378 MGI:107928
definition	GO_function : GO:0004028 - 3-chloroallyl aldehyde dehydrogenase activity [Evidence IDA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0001758 - retinal dehydrogenase activity [Evidence IDA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0009855 - determination of bilateral symmetry [Evidence IMP]; GO:0035115 - embryonic forelimb morphogenesis [Evidence IMP]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP]; GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0030900 - forebrain development [Evidence IMP]; GO:0030902 - hindbrain development [Evidence IMP]; GO:0008152 - metabolism [Evidence IEA]; GO:0016331 - morphogenesis of embryonic epithelium [Evidence IMP]; GO:0014032 - neural crest cell development [Evidence IMP]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0031016 - pancreas development [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]; GO:0009954 - proximal/distal pattern formation [Evidence IMP]; GO:0042573 - retinoic acid metabolism [Evidence IMP] [Evidence IDA]; GO:0048384 - retinoic acid receptor signaling pathway [Evidence IMP] codon_start : 1 note : retinaldehyde dehydrogenase 2; alcohol dehydrogenase family 1, subfamily A7; alcohol dehydrogenase family 1, subfamily A2 product : aldehyde dehydrogenase family 1, subfamily A2 protein_id : NP_033048.1

name	Grinl1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519919 CCDS:CCDS23326.1 GeneID:28015 MGI:107282
definition	GO_component : GO:0043025 - cell soma [Evidence IMP] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0051685 - maintenance of ER localization [Evidence IMP] codon_start : 1 product : glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A protein_id : NP_848717.1

name	AA407270 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701616 CCDS:CCDS23327.1 GeneID:102371 MGI:2142908
definition	codon_start : 1 product : hypothetical protein LOC102371 protein_id : NP_001028380.1

name	Cgnl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56550079 CCDS:CCDS23328.1 GeneID:68178 MGI:1915428
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0043296 - apical junction complex [Evidence IDA]; GO:0016459 - myosin [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003774 - motor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : junction-associated coiled-coil protein; paracingulin product : cingulin-like 1 protein_id : NP_080875.3

name	Tcf12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755730 CCDS:CCDS23329.1 GeneID:21406 MGI:101877
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transcription factor 12 protein_id : NP_035674.1

name	EG665964 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260017 GeneID:665964 MGI:3644625
definition	codon_start : 1 product : similar to ubiquitin A-52 residue ribosomal protein fusion product 1 protein_id : XP_985698.2

name	LOC547043 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:547043
definition	number : 3 pseudo : _no_value

name	LOC547043 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:547043
definition	number : 2 pseudo : _no_value

name	LOC547043 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:547043
definition	number : 1 pseudo : _no_value

name	LOC100040537 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040537
definition	number : 2 pseudo : _no_value

name	LOC100040537 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040537
definition	number : 1 pseudo : _no_value

name	Cycs-ps1 (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	note : cytochrome c pseudogene pseudo : _no_value

name	LOC665959 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260068 GeneID:665959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins product : similar to ribosomal protein L7a pseudo : _no_value transcript_id : XR_033550.1

name	LOC665970 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260018 GeneID:665970
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 20 Proteins product : similar to high mobility group box 1 pseudo : _no_value transcript_id : XR_032010.1

clone name	MSMg01-335K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510A12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-438D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258E01
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-343E17.T7 (MSMg01no343_e17.b1)	MSMg01-343E17.TJ (MSMg01no343_e17.g1)
ACC	AG456639	AG456640
length	751	782
length of high quality (start - end)	527 (26 - 552)	392 (65 - 456)
definition	CHROMAT_FILE: MSMg01no343_e17.b1 PHD_FILE: MSMg01no343_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:04 2005	CHROMAT_FILE: MSMg01no343_e17.g1 PHD_FILE: MSMg01no343_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:04 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TATACGACTCACTATATTCAGAGGATCCGCGGAATTCCATCAACATAATC CACTATATAAAGAAACTTGAAGACAAAAACCACATGATCATCTCCTTAGA TGTGGAGAAAGCATTTGACAAAATCCAACACCCATTTGTGATAAAAGTCT TGGAAAGATGAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATC TACAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGC AATCCCTCTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACC TATTCAACATTGTACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAG GAGATCAAGGGGATACAAATTGGGAAGGAAGAAGTCAAAATATCACTTTT TGCAGATGATATGATAGTATATATGAGTGACCCTAAAAATTCCACCACAG AACTCCTAAACTTGATAAACCACTTCAATGAAGTAGCTGGATATAATATA AAATTAACCCAAACAAGTCAATGGCCTTTCTCTACACAAAGGATAAACAG GCCGAGAAAGAAATTATGGAAACAACATCCTTCTCAATAGTCACAAATAA TATAAAATACCTTGGCGTGACTCTAAGGAAGTGAAAGATCTGTATGATAA AAACTTTCAGTCTCTGAAGAAAGAAATTAATGAAGATGGTAAGATCTCCC CTGCTCCTGAATTGGCCGGATCAAAAAAATATAAAAGGCTATTCTGTCCA A	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXTAGTGACCAAGAGACAGTTAAAACAACAACAAAAAA AAAACCCAAAAAACAAAAAACAAAACAACAACAACAACCGCTTGACACTA AGTAGCTATCAGTCATGATGAGACTGAATGTGCCGAATGGAAACAGGGAT GTGCCGCTTAGAGGCTCTGCTCAAGAGAGAACATGCTGCCCCAGGGGCAG AGTGTGCTTTCAGAAGACCGCTCAGGGTCTGCCTAAGCAGGGCTGACACT CTCTGGGGATGGCCTACTCCCACTCACTGATGGCAGCAGGAGTATAAAGG CCCTGTCCAGCACAGAGACCTCTCTCCAGTGCCATACGTGCCCCACCATA CCCAGTGTGGGTGGCTAAGCTGTCAAGTTTGTGCTGTGAGTCATCTTCCC TTTGGTAGAGGTCCCTGGTGAATCCCTGTGGATAAACTAAACCTCATTGA TGGCCTCCTAAGAACCCACCCGCAAAAAGGGGGTGTCCACCGGAAAAAAC CGGCCCTTTCTGTGAAAACCCTTGACTTGCTTTGTACCCTAAACACAAAT TGTGCCTTGGGTTGAAAAAAGACCTTTTATGGAGCTCCCCCTTTTAAAAA ACTCTTTTTAAGGGTCCTGCTTCTTTTTTGACATTTTTTGTTGCGTAATT GATTTTTTTTTTTTGCATACCCTTCTCTAATAGAATGTTTTCGCTTTCCC CTCATCCATTTCTTGTCCTTACTATCCTTTCC
quality values	Open. Hide. 8 8 8 8 11 15 20 22 13 9 9 10 22 26 22 12 10 10 10 12 24 34 28 22 12 13 13 26 30 59 59 35 35 35 35 29 30 28 28 28 25 21 14 11 11 11 11 11 13 18 28 33 33 33 48 48 48 53 50 50 53 57 57 53 53 43 47 47 47 57 57 50 50 50 50 50 51 68 68 68 68 68 68 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 48 46 46 46 48 57 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 59 59 59 68 57 57 57 57 57 59 59 59 59 59 59 57 59 59 68 68 68 68 68 59 59 59 59 59 59 59 57 57 57 57 57 57 57 59 59 59 59 68 59 59 57 47 43 43 44 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 57 57 57 57 54 54 48 46 41 47 42 48 57 54 54 54 54 54 54 48 48 43 43 43 46 43 43 43 43 43 43 43 48 59 48 48 48 48 59 48 59 47 47 46 41 47 59 41 37 36 38 39 37 37 30 30 35 39 37 37 28 32 32 35 32 32 36 32 39 36 36 36 37 39 40 40 39 41 41 32 32 29 32 37 37 32 24 24 14 14 14 26 24 25 25 27 37 30 30 30 34 32 16 18 14 28 28 40 39 39 39 32 32 22 24 19 20 22 27 25 27 30 30 25 27 27 32 34 32 20 20 15 26 15 18 17 28 22 28 19 24 24 12 11 10 11 12 23 25 37 30 30 25 29 36 41 28 28 18 18 18 22 24 13 13 13 17 16 10 8 8 8 10 12 12 11 11 11 12 17 22 30 37 21 9 8 8 8 9 8 15 12 12 11 12 12 12 11 12 12 23 23 18 13 11 11 7 8 8 8 10 12 22 22 10 10 8 8 8 10 15 16 25 19 22 12 14 14 26 30 17 17 17 12 8 10 8 8 8 8 8 8 8 9 10 8 8 8 9 14 12 14 9 10 10 10 8 8 7 8 8 8 8 9 9 17 12 10 10 10 8 8 6 6 8 8 6 10 19 9 10 8 6 6 8 7 10 8 8 8 8 8 8 10 11 9 6 8 8 8 8 8 12 11 10 8 8 8 8 8 8 8 8 8 10 8 11 8 8 8 8 8 6 6 8 7 8 8 8 6	Open. Hide. 6 6 6 7 9 20 28 32 31 31 28 22 27 27 25 37 37 37 37 31 32 32 29 34 31 21 16 12 14 14 19 22 30 39 37 37 30 27 30 28 28 33 33 44 50 53 53 57 57 23 29 29 24 29 42 43 57 57 37 42 37 37 42 42 57 68 68 68 68 68 68 54 54 54 54 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 54 54 57 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 59 62 57 57 57 59 59 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 52 57 57 57 57 68 68 68 68 57 57 54 52 52 43 43 35 43 43 57 59 59 59 57 57 59 59 59 57 57 57 57 57 57 59 57 57 57 59 59 68 59 59 57 57 50 47 47 57 59 59 68 59 59 59 59 57 57 47 57 47 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 57 57 57 48 54 54 57 57 57 54 54 54 54 54 48 59 48 47 47 48 47 47 50 57 57 37 37 25 25 25 34 34 48 59 59 59 41 47 41 41 37 37 35 31 31 39 43 47 41 37 37 32 29 27 34 35 37 37 47 39 40 40 39 37 32 32 28 32 23 23 19 28 31 35 31 28 32 24 25 12 12 12 25 25 37 37 31 31 31 25 31 34 25 28 28 31 32 20 20 18 25 19 20 20 22 22 28 27 31 39 34 31 31 25 19 14 12 20 11 11 10 12 10 12 11 19 10 11 8 8 8 8 9 8 9 12 17 17 22 11 8 8 8 8 8 13 11 11 8 8 8 8 8 8 8 9 9 9 10 12 16 16 16 14 12 12 11 12 12 9 9 8 8 8 8 8 8 8 8 8 8 8 9 10 10 10 10 12 10 17 17 17 23 23 9 9 9 6 8 8 8 8 8 8 8 8 8 9 8 10 8 8 8 8 8 8 8 8 8 8 10 10 10 7 7 9 8 7 8 7 10 10 10 9 9 9 9 8 6 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 9 11 9 11 11 9 10 16 8 8 6 6 6 6 8 8 8 6 6 6 6 6 8 11 11 8 6 6 6 6 6 9 11 11 10 10 7 6 8 6 6 8 6 6 8 8 11 12 11 11 9 9 9 9 10 14 23 12 8 8 8 8 8 13 13 10 8 8 11 9 11 10 8 8 8 8 8 8 8 8 6 6 6 7 10 10 10 8 8 8 8 13 17 25 9 9 8 8 8 8 8 9 8 8 8 8 8 8 9 11 13 13 19 16 14 10 10 10 17 10 10 8 8 8 10 10 14 8 10 6 6 8 10 8 8 8 15 11 8 7 7 7 8 8 8 8 9 10 10 8 8 8 8 11 13 20 15 13 12 8 7 7 7 8 8 8 11 11 9 11 11 11 14 10 10 10 10 11 9 9 12 12 8 8 9 8 8 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no343_e17.g1 MSMg01no343_e17.g1 CHROMAT_FILE:
MSMg01no343_e17.g1 PHD_FILE: MSMg01no343_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:04 2005
         (392 letters)



>mm_chr9_71128293_71129084
          Length = 792

 Score =  719 bits (372), Expect = 0.0
 Identities = 387/392 (98%), Gaps = 1/392 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgaccaagagacagttaaaacaacaacaaaaaaaaaacccaaaaaacaaaaaacaaa 60
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 665 tagtgaccaagaggcagttaaaacaacaac-aaaaaaaaacccaaaaaacaaaaaacaaa 607

                                                                       
Query: 61  acaacaacaacaaccgcttgacactaagtagctatcagtcatgatgagactgaatgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acaacaacaacaaccgcttgacactaagtagctatcagtcatgatgagactgaatgtgcc 547

                                                                       
Query: 121 gaatggaaacagggatgtgccgcttagaggctctgctcaagagagaacatgctgccccag 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaatggaaacagggatgtgccacttagaggctctgctcaagagagaacatgctgccccag 487

                                                                       
Query: 181 gggcagagtgtgctttcagaagaccgctcagggtctgcctaagcagggctgacactctct 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggcagagcgtgctttcagaagaccgctcagggtctgcctaagcagggctgacactctct 427

                                                                       
Query: 241 ggggatggcctactcccactcactgatggcagcaggagtataaaggccctgtccagcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggggatggcctactcccactcactgatggcagcaggagtataaaggccctgtccagcaca 367

                                                                       
Query: 301 gagacctctctccagtgccatacgtgccccaccatacccagtgtgggtggctaagctgtc 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 366 gagacctctctccagtgccatacgtgccccaccatgcccagtgtgggtggctaagctgtc 307

                                           
Query: 361 aagtttgtgctgtgagtcatcttccctttggt 392
           ||||||||||||||||||||||||||||||||
Sbjct: 306 aagtttgtgctgtgagtcatcttccctttggt 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information