Query= MSMg01no343_j17.b1 MSMg01no343_j17.b1 CHROMAT_FILE:
MSMg01no343_j17.b1 PHD_FILE: MSMg01no343_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:30 2005
(393 letters)
>mm_chr9_16851719_16852511
Length = 793
Score = 760 bits (393), Expect = 0.0
Identities = 393/393 (100%)
Strand = Plus / Plus
Query: 1 agaagagggccaagaaccacacagccctggtggggaagtgctgggacacttgccatttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagagggccaagaaccacacagccctggtggggaagtgctgggacacttgccatttta 260
Query: 61 ttgtatcatttcacttctgacatgtctaactttttgtaaagtattgtcacaaatagatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtatcatttcacttctgacatgtctaactttttgtaaagtattgtcacaaatagatgt 320
Query: 121 cacctggtcaagctagagctctgagtcttagttgaatcttcagtgtaaattagaggatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacctggtcaagctagagctctgagtcttagttgaatcttcagtgtaaattagaggatac 380
Query: 181 tcttatctatgcagcaccaatctcaagttatataaagctgtctttttttgctcaattcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttatctatgcagcaccaatctcaagttatataaagctgtctttttttgctcaattcaa 440
Query: 241 atttaatattgactaggatcctattgttaggtaaacacatgaaatcttgcctgggttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttaatattgactaggatcctattgttaggtaaacacatgaaatcttgcctgggttctg 500
Query: 301 ctttagtattctgttctccatcatagtagacattacctaaaagtaaactttctgtgtgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttagtattctgttctccatcatagtagacattacctaaaagtaaactttctgtgtgtg 560
Query: 361 gtaatgtcctgtgatactactgcctttactagg 393
|||||||||||||||||||||||||||||||||
Sbjct: 561 gtaatgtcctgtgatactactgcctttactagg 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_j17.g1 MSMg01no343_j17.g1 CHROMAT_FILE:
MSMg01no343_j17.g1 PHD_FILE: MSMg01no343_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:30 2005
(355 letters)
>mm_chr9_17013914_17014668
Length = 755
Score = 366 bits (189), Expect = e-105
Identities = 321/381 (84%), Gaps = 33/381 (8%)
Strand = Plus / Minus
Query: 1 actcctcttattttcaccatgtgatgtgaggtgagtctctgccagggtttgatacctggc 60
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 392 actcctcttattttcaccatgtgctgtgaggtgagtctctgccagggtgtgatacctggc 333
Query: 61 tcacaactgaatctgcttgttcaatgcccaggatagtcttctatctcccagtgtatcaac 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcacaactgagtctgcttgttcaatgcccaggatagtcttctatctcccagtgtatcaac 273
Query: 121 aagcttaaatttgaatcacttggaggatcctccaagtgatttatataaatcctccaagtg 180
|| || ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 272 aaactgaaacttgaatcacttggaggaccctccaagtgatttatgtaaatcctccaagtg 213
Query: 181 atatatatcattcata--cacacacacacaca------------cacacacaca--tata 224
|||||||||||||||| | | | | | | | | | | | | ||||
Sbjct: 212 atatatatcattcatatgtatatatatatatatgtgtgtgtatgtatatatatatgtata 153
Query: 225 ta----tatatata--tatata----tacacccacaca--cacatatatgcttattttgt 272
|| |||||||| |||||| || | | | | ||||||||| |||||||
Sbjct: 152 tatgtgtatatatatgtatatatgtgta----tatatatgtatatatatgctcattttgt 97
Query: 273 ttctttattatgtgattcgcagatgatgtcatcatctgggttatatttactttaacatat 332
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ttctttattatgtgattctcagatgatgtcatcatctgggttatatttactttaacatat 37
Query: 333 atttacttgaaggctttttaa 353
||||||||||||| |||||||
Sbjct: 36 atttacttgaagg-tttttaa 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
