BAC Information

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BAC

Clone NameMSMg01-344A18
Chromosome9 (Build37)
Map Location 75,503,610 - 75,504,061
singlet/doubletsinglet
Overlap geneScg3
Upstream geneLOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2
Downstream geneLOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344A18.T7 (MSMg01no344_a18.b1)MSMg01-344A18.TJ (MSMg01no344_a18.g1)
ACCAG457205AG457206
length752749
length of high quality
(start - end)		456 (46 - 501)550 (74 - 623)
definitionCHROMAT_FILE: MSMg01no344_a18.b1 PHD_FILE: MSMg01no344_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:07 2005CHROMAT_FILE: MSMg01no344_a18.g1 PHD_FILE: MSMg01no344_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGAAAGTCAGTTTATGGTTTTACAAAGGAGGAGACACTTTCGAT
ATCTTTCAGCAATGTAGGTTGATATAAAACCTCCCAAGTGTGTTTGGGCT
CCCACCTCACTTGCTGGCTCAGAGAAGCCTAGACCGTGTCTGGATGTGTC
TAACAGAAAGAAAGAGAGAACTGACTATGAAAGCTATTTTCTTTATATGC
CTTGGGACCTGAGGCATATAATGGTCTGTTCTTAGATTGCTTAAGAAAGA
ACATCCTTAGGAGCTACCATTTTAGGAACTTAATAGGCTGACTTTTCTGG
CTTCTATAAAAAAGGGAAGGGAATGAGAAGATGTTCAGTGAAAGTCACCT
TAGAGTCACCTTTTCCATTATAACATCATTATCTAGTTGCCATCATGACA
AGTGATGGCACCAGAATGAGCCTATGGCGCTACAATGCTCATCTCATTTT
CAAAATGTTTTTCAACTGGAGCGGTTGCTCAGTGGCTAAGAGCACGGGTT
GCTTTTCCAGAGGACTCTGGTTCCTTTGCTACATCCCAATGTTGGTTGAA
AACAATCCGAAATCCCGGCCCCAAAAAAAAAGCCCCCTTCTGGCCCCTTT
GGGACTATACAATCCCACCTACTTTTATATTATTCTTTCCCTTTCCACTT
ATTTTTAATTTATCTCTTTTTTCTTTTTTACTCTCTCTCCCCTTTTATTC
TG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATACAACGGGAGCAGGAATCAAACA
AATACGGCTTTCCTAATGCCTGGCAAACTAAACTACAAATGGAAACATGA
CAGTGTAGATAGACAAGGACACTTCATTCTACTTAAGGGAACAATTAACT
AAGAAGACATTGCAATCCTAAATATATATATATATATGTATGCACCAAGT
TCTGGTGAAAACAATTTCATTTACAGAATTTACTACTGGAATTAAAGAAA
CAGATTAACATCAAACTATTAATAGTAGGTGACTTTAATATCTCTCGTTC
TCCAATAGATAAATCATCTGGATGAAAAATAATATCATAATTAAATGGTA
TACACCATATGGAATTAACAGATATCTACAGAATATTCCACCCGAAACCC
AATGATGTGTGTGTGTGTATTTATACACATAAACATATCCAGCAGGTCAC
GGAAGCTTCTGTAATAAAAAATACATTCTGAAATTCAGAAATTTTGAAGT
AACTCCCTGTATCCTATATTGACCATAACATAATAAAACTTGAAGTGACA
GCATGCAAGTCTCTAGTTAGTGCACAAATCCATGGAAACCAAAAACATCA
TTTTGAATGACGAATGGGTCAAAAACCAAAAGAGTCAAGCATAATAGCAA
TCAATAAATGAAAGTTTAAGCTACTTGAGATTTTTATCATCCCCGCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_a18.b1 MSMg01no344_a18.b1 CHROMAT_FILE:
MSMg01no344_a18.b1 PHD_FILE: MSMg01no344_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:07 2005
         (456 letters)



>mm_chr9_75503406_75504261
          Length = 856

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggaaagtcagtttatggttttacaaaggaggagacactttcgatatctttcag 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggaaaggcagtttatggttttacaaaggaggagacactttcgatatctttcag 264

                                                                       
Query: 65  caatgtaggttgatataaaacctcccaagtgtgtttgggctcccacctcacttgctggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatgtaggttgatataaaacctcccaagtgtgtttgggctcccacctcacttgctggct 324

                                                                       
Query: 125 cagagaagcctagaccgtgtctggatgtgtctaacagaaagaaagagagaactgactatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagagaagcctagaccgtgtctggatgtgtctaacagaaagaaagagagaactgactatg 384

                                                                       
Query: 185 aaagctattttctttatatgccttgggacctgaggcatataatggtctgttcttagattg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagctattttctttatatgccttgggacctgaggcatataatggtctgttcttagattg 444

                                                                       
Query: 245 cttaagaaagaacatccttaggagctaccattttaggaacttaataggctgacttttctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaagaaagaacatccttaggagctaccattttaggaacttaataggctgacttttctg 504

                                                                       
Query: 305 gcttctataaaaaagggaagggaatgagaagatgttcagtgaaagtcaccttagagtcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 gcttctataaaaaagggaagggaatgagaagatgttcagtgaaagtcacctcagagtcac 564

                                                                       
Query: 365 cttttccattataacatcattatctagttgccatcatgacaagtgatggcaccagaatga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttttccattataacatcattatctagttgccatcatgacaagtgatggcaccagaatga 624

                                           
Query: 425 gcctatggcgctacaatgctcatctcattttc 456
           |||||||| |||||||||||||||||||||||
Sbjct: 625 gcctatggtgctacaatgctcatctcattttc 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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