BAC Information

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BAC

Clone NameMSMg01-344I05
Chromosome9 (Build37)
Map Location 54,830,467 - 54,830,814
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4
Downstream geneChrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344I05.T7 (MSMg01no344_i05.b1)MSMg01-344I05.TJ (MSMg01no344_i05.g1)
ACCAG457561AG457562
length780728
length of high quality
(start - end)
346 (72 - 417)165 (69 - 233)
definitionCHROMAT_FILE: MSMg01no344_i05.b1 PHD_FILE: MSMg01no344_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:43 2005CHROMAT_FILE: MSMg01no344_i05.g1 PHD_FILE: MSMg01no344_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCTCTCCATAGCGTTATTCCGTTGAACCAGGAGGACAACACTGCTTG
CTTTTCTCATCCGTTTTCAGGATTGATTGGTGCATATAAAACGCCAGGCA
GTGCCTGACAGCCTAGAAAATGGTATCTCTGCCACTCTTGATGGAGCTGG
GAATTTTGAAAAGGTTTCTCTGTTTTAAGATAAATCATTGTTGCTGATTC
TTCAATGGTGTAAACTGCTAACTCTTGTGAGGCTTGGTGTTTTAACCAGA
CTTGATGACCTACTCCTTTCTTTTCCCACTCGGTGAGACTTCTTTAATAC
TAAGCATCTTTATACTAGTTTCCCCCCCCCCATGCGAGCTCCTTAAGATC
CGATTCCTTTGTGTGTGGGTATGCGCATGTGCTGGTAGAGGAGAGATCAT
CCTTGGATATTGCTCCTGGGGGTGGGGGAGCTGTCCAATTTGGCCGCTTT
GTTTGTCTGTCGTTGCTTGTGACAGCCTTTCATGTTGACCTGTACTCTCT
TGGTTATCTATATACTTCATTGACACTTCTTGCTTTATTTTCTATGGTAT
CTCGTTAGTTCTACTTTCCCCTTCTACTAGTTGTGCGATTACCCACGCTT
CTTCTTTAGTTTTTGTACTTTTCTATATATTTTTTCTTGTGTTTATTTAT
ATTTTATGTATTATTTTATGCTTTATTCTACTACATAATCGACCCTATAC
ATAATTTATTATTATTTTTCTTTCACCTCG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGATAGCCAGAGATACACAGAGAAACCCTG
TCTCAAAAAACCAAACAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGA
AAAAGAAAGCAAGCAGGAGGAGCAAGCCAGCAAGCAGGCAGCACTCTTCC
ATGGCTTATGCATCATTTCTTGCCTCCAGGAGTCTGCCTTGACTTCCTTT
CCTGATGTCCATGGGCAATGGACTAGAAATTGTAAGCCGAAGCAAACCCT
GTCCTCCCTAAGTGGCTTTTGGTCACAGTGTCTTAGCACAGCAGTAGAAA
GCTAACCAGGAAACCAACGCCCCCCCCCCCCCAAATCATAGTTTTTAAAA
GCCAAACGTAACACTGCATGCTTGTAACCTCATCACTAGGGGATTGGGGC
AAGCAGATCCCTGGGGGTCACCAGCTAGCCACAGGCCAGTGAAAGACTAT
TAACATACACGCGATATTACGTAGTAAACAGATACGTATATAAGGACGAC
TCCGGACGAATAACACGGAGTTTCGCCCGCAGCTTATCGGTTCCAACCTT
ATTTTTACGCATGTTTTTAGAAAAGATTGGCCTCCCTTGTAACCCACAAG
AGTTACGGCACAAGAAAGGAACGGCCAATCGATACACCACGTTTAAAAAA
GTAATTTTGACACCGCTTCTTTGCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_i05.b1 MSMg01no344_i05.b1 CHROMAT_FILE:
MSMg01no344_i05.b1 PHD_FILE: MSMg01no344_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:43 2005
         (346 letters)



>mm_chr9_54830267_54831014
          Length = 748

 Score =  654 bits (338), Expect = 0.0
 Identities = 345/348 (99%), Gaps = 2/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgttgaaccaggaggacaacactgcttgcttttctcatccgttttcaggattgattggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgttgaaccaggaggacaacactgcttgcttttctcatccgttttcaggattgattggt 260

                                                                       
Query: 61  gcatataaaacgccaggcagtgcctgacagcctagaaaatggtatctctgccactcttga 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gcatataaaacgccaggcagtgcctgacagcctagaaaatggtatccctgccactcttga 320

                                                                       
Query: 121 tggagctgggaattttgaaaaggtttctctgttttaagataaatcattgttgctgattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagctgggaattttgaaaaggtttctctgttttaagataaatcattgttgctgattct 380

                                                                       
Query: 181 tcaatggtgtaaactgctaactcttgtgaggcttggtgttttaaccagacttgatgacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatggtgtaaactgctaactcttgtgaggcttggtgttttaaccagacttgatgacct 440

                                                                       
Query: 241 actcctttcttttcccactcggtgagacttctttaatactaagcatctttatactagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcctttcttttcccactcggtgagacttctttaatactaagcatctttatactagttt 500

                                                           
Query: 301 cccccccccc--atgcgagctccttaagatccgattcctttgtgtgtg 346
           ||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccccccccccatgcgagctccttaagatccgattcctttgtgtgtg 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 748
Length adjustment: 9
Effective length of query: 337
Effective length of database: 739
Effective search space:   249043
Effective search space used:   249043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)