Query= MSMg01no344_n02.b1 MSMg01no344_n02.b1 CHROMAT_FILE:
MSMg01no344_n02.b1 PHD_FILE: MSMg01no344_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:07 2005
(477 letters)
>mm_chr9_52759177_52760053
Length = 877
Score = 774 bits (400), Expect = 0.0
Identities = 451/478 (94%), Gaps = 18/478 (3%)
Strand = Plus / Minus
Query: 4 gcaactgggctggctggtgggttctgcctgcttctgcatgaaaatgctgagattgtggca 63
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 877 gcaactgggctggctggtgggttctgcctgcttcttcatgaaaatgctgagattgcggca 818
Query: 64 aaccatgcctgcaacatgagggtgtgggggaaagtctcatctaggaaaacggta----gt 119
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 817 aaccatgcctgcaacatgagggtgtgggggaaagtctcatctaggaaaac--tataccgt 760
Query: 120 tttaattgtttctaagtatttaacttcagaatctggactcagatctgtatgttagtgcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tttaattgtttctaagtatttaacttcagaatctggactcagatctgtatgttagtgcag 700
Query: 180 caaggactttatccacggagtcctctccccgtctctgaagctgtttttcccacttgaatt 239
|||| ||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 699 caagcactttatccacagagtc------------ctgaagctgttttccccacttgaatt 652
Query: 240 gtgaagagtttgatactatgttctgattcttgggaatttgacaaaactcctccatgccct 299
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gtgaagagtttgataccaggttctgattcttgggaatttgacaaaactcctccatgccct 592
Query: 300 cccattttcttctcattttcttacagtagtggcaatgtaacactaatatctatctcttga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cccattttcttctcattttcttacagtagtggcaatgtaacactaatatctatctcttga 532
Query: 360 aatatgttgctctgtgctctatagagactattcctaatatctcctcttgaaatgttttct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aatatgttgctctgtgctctatagagactattcctaatatctcctcttgaaatgttttct 472
Query: 420 atgcttttgtaggtgttctttagtaggctaatgcaattgtcattttctttaaacagtt 477
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 471 atgcttttgtaggtgttctttagtaggcgaatgcaattgtcatcttctttaaacagtt 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_n02.g1 MSMg01no344_n02.g1 CHROMAT_FILE:
MSMg01no344_n02.g1 PHD_FILE: MSMg01no344_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:07 2005
(379 letters)
>mm_chr9_52529128_52529906
Length = 779
Score = 625 bits (323), Expect = 0.0
Identities = 361/379 (95%), Gaps = 11/379 (2%)
Strand = Plus / Plus
Query: 1 ctaatgagaagccagatagattgaagaattaatgatctctttctcaaaatctgcttattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctaatgagaagccagatagattgaagaattaatgatctctttctcaaaatctgctgattg 260
Query: 61 tttacaccctgatataataaaagtcagatttattgccagtactgaaaagagtcactgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacaccctgatataataaaagtcagatttattgccagtactgaaaagagtcactgatg 320
Query: 121 ccaggtctggtggcacaggcctttaatctcagcacttgggaggcagaagcgggaggaact 180
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 321 ccaggtctggtggcacaggcctttaatctcagcacttgggagacagaagctggaggaact 380
Query: 181 ctatctagagtttgaggccagtcagtttcaggacagccagaacaacagagaaaaatcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatctagagtttgaggccagtcagtttcaggacagccagaacaacagagaaaaatcttc 440
Query: 241 tcgggggggggggcggaagggcgaaggaggtttcagcgatgattaatagctgccacgtca 300
| |||||| |||| ||| ||||||||| |||||||||||||||||||||||
Sbjct: 441 tatgggggg----cgga-ggg------aggtttcagtgatgattaatagctgccacgtca 489
Query: 301 ctggaacttataaaatgcctttacatatattgtctagctgatttctactttaactcacaa 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 490 ctggaacttataaaatgcctttacatatattgtctagctgacttctactttaactcacaa 549
Query: 361 gacagataccttgttctag 379
|||||||||||||||||||
Sbjct: 550 gacagataccttgttctag 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
