Query= MSMg01no345_c03.b1 MSMg01no345_c03.b1 CHROMAT_FILE:
MSMg01no345_c03.b1 PHD_FILE: MSMg01no345_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:31 2005
(547 letters)
>mm_chr9_43773057_43774003
Length = 947
Score = 1006 bits (520), Expect = 0.0
Identities = 538/544 (98%)
Strand = Plus / Minus
Query: 4 ggaattctaagtcgcctccgccccaaccactcctcctggcctgcacagcctgggagagat 63
||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 803 ggaattctaagtcaccaccaccccaaccactcctcctggcctgcacagcctgggaaagat 744
Query: 64 tcccccacttcagctgggcatagcaggagactcctgtaatcccaacactcggtaagctga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcccccacttcagctgggcatagcaggagactcctgtaatcccaacactcggtaagctga 684
Query: 124 ggcaggagaatggagagcttgagttcagctggggttacatagtgaggacatatctcaaaa 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggcaggaggatggagagcttgagttcagctggggttacatagtgaggacatatctcaaaa 624
Query: 184 taaaaaaagacaaatgagaattccttcttccacttatttttggggctatgggtccctcac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taaaaaaagacaaatgagaattccttcttccacttatttttggggctatgggtccctcac 564
Query: 244 caaacctacttttaaactatacaggatagcatctgatatgaatatagtgtgaatatacgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caaacctacttttaaactatacaggatagcatctgatatgaatatagtgtgaatatacgc 504
Query: 304 aggcattttaagtctggctgaagatgtaattcatcagctgtgtgatgtaaggccactcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggcattttaagtctggctgaagatgtaattcatcagctgtgtgatgtaaggccactcct 444
Query: 364 cagctctctgagttaaggccgaccttgaacttctgttccttctgccccatgatttatgca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagctctctgagttaaggccgaccttgaacttctgttccttctgccccatgatttatgca 384
Query: 424 gtgttatggatctaacccagggcactggacgttctaaatgagtactctaccgactgggcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtgttatggatctaacccagggcactggacgttctaaatgagtactctaccgactgggcc 324
Query: 484 acactcccaggcccccttttccttgtttgtttatatagtatctcactttgtagcccagga 543
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acactcccaggtccccttttccttgtttgtttatatagtatctcactttgtagcccagga 264
Query: 544 tggc 547
||||
Sbjct: 263 tggc 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_c03.g1 MSMg01no345_c03.g1 CHROMAT_FILE:
MSMg01no345_c03.g1 PHD_FILE: MSMg01no345_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:31 2005
(430 letters)
>mm_chr9_43662882_43663711
Length = 830
Score = 741 bits (383), Expect = 0.0
Identities = 422/441 (95%), Gaps = 11/441 (2%)
Strand = Plus / Plus
Query: 1 actgtgtagcctaagctggcctggaactcactgtgtagccta-----gcctggaactcac 55
||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 190 actgtgtagcccaggctggcctggaattcactgtgtagcctaagctggcctggaactcac 249
Query: 56 tgtgtagcctaggctgtcttggaagtcactattcctgccctagaaggatccctttgtctc 115
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgtgtagcctaggctgccttggaagtcactattcctgccctagaaggatccctttgtctc 309
Query: 116 agcatctcagaatgcctgccaaactcttggagctttgaaggtgtaaacaagaaacacctg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agcatctcagaatgcctgccaaactcttggagctttgaaggtgtaaacaagaaacacctg 369
Query: 176 tctgggtctccaaactcatgctgttcccagtttaaaaaaaaaaaaaaaa------gccaa 229
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 370 tctgggtctccaaactcatgctgttcccagtttaaaaaaaaaaaaaaaaaaaaaagccaa 429
Query: 230 atcccatttcaattgcagccttagcaccatcccgtgctgaccactgaggaaccccctgtt 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 430 atcccatttcaattgcagccttagcaccatcccgtgctgaccactgaggaacccccagtt 489
Query: 290 gcttctgtcttggacagtgggcttttgaggggatggattgaattccctttatctttgtca 349
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 490 gcttctgtcttggacagtgggcatttgaggggatggattgaattacctttatctttgtca 549
Query: 350 tcccagtctcggtcctgagaaaagtcaagaaatacctgctagccagaggtagtgctcatg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcccagtctcggtcctgagaaaagtcaagaaatacctgctagccagaggtagtgctcatg 609
Query: 410 tgtataatccaacactgagga 430
||||||||||||||||||||
Sbjct: 610 cgtataatccaacactgagga 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
