BAC Information

Click to search

BAC

Clone NameMSMg01-345D17
Chromosome9 (Build37)
Map Location 8,185,080 - 8,185,551
singlet/doubletsinglet
Overlap genenone
Upstream geneDcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108
Downstream gene1700128F08Rik, Trpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345D17.T7 (MSMg01no345_d17.b1)MSMg01-345D17.TJ (MSMg01no345_d17.g1)
ACCAG458104AG458105
length750752
length of high quality
(start - end)		492 (55 - 546)471 (84 - 554)
definitionCHROMAT_FILE: MSMg01no345_d17.b1 PHD_FILE: MSMg01no345_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:38 2005CHROMAT_FILE: MSMg01no345_d17.g1 PHD_FILE: MSMg01no345_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAAANTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGGATTCCAGCAAAATTTTGCTGACAGGACCCTGATATAGCTG
TCTCTTGTAAGGCTTTGCCAATTCCTGGCAAATACAGAAGTGGATGCTCA
CAGTCATTTATTGGATGGGACACAGAGCCTCCAGTGAAGGACCTAGAGAA
AGTACCCAAGGAGCTAAAGGTGTCTACAACCCTATAGGAAGAACAACAAT
ATGAACTAATCAGTACCCCCTAGAGCTAGTGTCTCTAGTTGCACATATAG
CAGAGGATGGCCTAGTTGACCTCAATGGGAGGAGAGGCCCTTGGTCTTGT
GAACATTATGCCCCAGTACAGGGGAATGCCAGGGCTAGGAAGTGGTAGTG
TGTGGGCTGGGGAGCAGGGCAGGGAGAAGGTATAGGGGACTTTTGGGATA
GCATTTGAAATGTAAATGAAAAAAAATGTCTAATAAATTAGTAATTTTTT
TAAAAGGCCACTAACAGATTGGGAAAGATCTTTACCAATCCTAAATCCAA
CTGGGGACTAATATCCAATATATATATAAAACTCCAAAAGTTAGACTCCA
GAAAACCCAATAACCCTACTTAAAAATGGGTTACAGAGCTAAACCAAGAA
TTCTCCACTGAGGAATAATACCGAATGCTGGAAAAGCCCTAAAAAAAGTT
CCAAACCCTTATCTCCCGGGAAGAAAATTCAAACAACCCGAAATTACCTC


NNNNNTTCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGGCACATGGATC
AAAAACAGCTCAGTTGTCCAGATTAAATCTCAATGAAAATCAGAAGAACT
TACAACCCAAATTTTAAGTAATTTTATTTTAAATTGTAGTGCAATTTCTG
TAGTTATTTTTGAAAACATGTAAAATTTTTTACATAGTTCTTTTTTAAGC
TAGAGTTTAATATTTTAGCCAGAAGATGGGTATAGATGGTATGTTAGTGT
TATGATTTAATTAATAAACTTCAGTTTTGTAGCATTTTATAAAAGCAATC
ATGGCATATCATGGTATATTTCCTATTTGATTATACTAACATCACATAAT
TGTTTGCAAGGTGCATAGTGTTTTAAAAGGAACTTGCCTTCTCTTTTGAG
CATATAAATTATAGTAAGTTGTTAGGAAAACTGAGAAGAGAATCTTAAAT
ACTTCTATATCCCTGTGCTTGTTTGTGTAATTTACAGTTAACTTCTGCTG
AAGACAGTTACNAGGAGAAACTTATTAACACCACAAGGTTAAAATTTTTA
CCAAGTGGTGGCTCTCTGCCAGCAGGTCTAGGCTGAGAGGAGAGAACCCA
GTCTCTCTGGGGCTGAAATGGAAAGGTGAGGGGTGCAACTCAAATCTCCC
GCATCCCGGAAAAACCCCCCCCAGAAAACCCACAATCTTGTTCAACTGAG
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_d17.g1 MSMg01no345_d17.g1 CHROMAT_FILE:
MSMg01no345_d17.g1 PHD_FILE: MSMg01no345_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:39 2005
         (471 letters)



>mm_chr9_8184880_8185751
          Length = 872

 Score =  835 bits (432), Expect = 0.0
 Identities = 462/472 (97%), Gaps = 1/472 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggggcacatggatcaaaaacagctcagttgtccagattaaatctcaatgaaaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggggcacatggatcaaaaacagctcagttgtccagattaaatctcaatgaaaatcag 260

                                                                       
Query: 61  aagaacttacaacccaaattttaagtaattttattttaaattgtagtgcaatttctgtag 120
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaacttacaacccaaattttaaataattttattttaaattgtagtgcaatttctgtag 320

                                                                       
Query: 121 ttatttttgaaaacatgtaaaattttttacatagttcttttttaagctagagtttaatat 180
           |||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||
Sbjct: 321 ttatttttgaaaacatgtaaaaatttttacataattcttttttaagctagcgtttaatat 380

                                                                       
Query: 181 tttagccagaagatgggtatagatggtatgttagtgttatgatttaattaataaacttca 240
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 381 tttagccagaagatgggtatagatggcatgttagtgttatggtttaattaataaacttca 440

                                                                       
Query: 241 gttttgtagcattttataaaagcaatcatggcatatcatggtatatttcctatttgatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttgtagcattttataaaagcaatcatggcatatcatggtatatttcctatttgatta 500

                                                                       
Query: 301 tactaacatcacataattgtttgcaaggtgcata-gtgttttaaaaggaacttgccttct 359
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tactaacatcacgtaattgtttgcaaggtgcataagtgttttaaaaggaacttgccttct 560

                                                                       
Query: 360 cttttgagcatataaattatagtaagttgttaggaaaactgagaagagaatcttaaatac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttgagcatataaattatagtaagttgttaggaaaactgagaagagaatcttaaatac 620

                                                               
Query: 420 ttctatatccctgtgcttgtttgtgtaatttacagttaacttctgctgaaga 471
           |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctatatccctatgcttgtttgtgtaatttacagttaacttctgctgaaga 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space:   397382
Effective search space used:   397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |