BAC Information

Click to search

BAC

Clone NameMSMg01-345G08
Chromosome9 (Build37)
Map Location 49,440,874 - 49,441,256
singlet/doubletsinglet
Overlap geneNcam1
Upstream geneZbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12
Downstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345G08.T7 (MSMg01no345_g08.b1)MSMg01-345G08.TJ (MSMg01no345_g08.g1)
ACCAG458229AG458230
length983776
length of high quality
(start - end)		---405 (84 - 488)
definitionCHROMAT_FILE: MSMg01no345_g08.b1 PHD_FILE: MSMg01no345_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:50 2005CHROMAT_FILE: MSMg01no345_g08.g1 PHD_FILE: MSMg01no345_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCAGAG
AATCCGCGGNAATTCACCAGNGCTTCCCCTGTGTAGTGCGTGTGNTGTGC
GTGTGTCGTGTGTGTGTGTGATGTGTGTGTGCACATGTGCTCTGTAGTGT
GTGTCTGTCTCGTGACAATCTCCCACCATACCAAACTCCCCCTACACACC
CACCAACAATTCACCAAAACATAACCAACCAATATTCTCAAACACCTACA
CAAAAAACCCACCACAAACCCAACACACACCCACACAACACATACTCTCC
CCACCCACCACCTTAACCAAAACCCCACCCCCAACACACACACAACCACC
CATCCCGTCCATTAAACACCCTCCTTTTTTTATCTTCCCNACCCCACCCA
CACCCACACTCTCACCCCACTACTATTATACCACACCACCCCACTCACTC
CTACACCACTCACCCACAATCCCCCAATCACCCAACCATAATACCCCACC
CCCCCTCCTACATCCACCACCCCCTCCCCCCCCATCAATAAACTCCCAAC
AAACCCCACCACAACAACCCATCCACTCCACTCAAAATCACACTCCTCAT
CCGTACCCACAATCACCCCCTCTACACACAAACACACCTCACCTTCAACA
ACCACACCCCCACCCCCACACTCCCCCACCACACAATACACACCTCCACC
CCCCCCCTCCTCACCTTTACACCCACCACCCCACCACACCCCAACCCCAC
ACCTCAACAACACAACCACACACCCCCTTCCTACCTACATCAAACACTCT
CACCCACAAACTACATACATCTCAACTTCCTCCTCCCAACCCCATCTCCA
CCTCTAACACCCACCACTCACAAAACCACTAACCAACCACCACCACACAT
CACCCAAAATAACCCACCTACCCAAACACCCTCACCCACCTCAACCCCTC
TCACACTACACATACCTCATACAACACCAATAN

NNNCCACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAACCTCAGGTTTG
CTGGAGTACATCCAAGCAGGGTGTTCAAGAAGCTGCCAGGCTGGGCTTCC
ACCTGCAAGAGGCTGGATGAGAACTTGATGGTCAGCCTGAGTCTGAGTCA
CAGAGACAAATGAGGTCCTGGGCTTGAGAACTAGTGTATGTAAAGGATGT
TAGCTACACAGGTGCTTTACCCAAGACTACTCATGGCACCTTTGTCCAGG
TCACTACACCAACTAACACCCAGGACAGCGCCTAACCTCAGTCTGTGCTC
TAACCATTCACAATCCTGGTGGTTAACTGCTCACAGGTTGACAAATTTAT
CAATGGCTATAAGGGTTTGATACCCAAAGTAATTTAAACTTGAAGATATT
TTGTGTCTGTGTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTANTT
GTTTCTTTNTTNTTTTTTTTTTTTATTTTGATTGTGTTGTTTTTCGTTTN
TGCCTTTTTTTTATTCTATTCCCTCCCTCTTCCCTTACTTCTTCTTACTT
CTTTATATCCTCCTTCCCTCTATTTTTTCTTATTTTCTTCGTCTTATTAT
CGATTACATTTTCTCTATTTTTTCCCTTATCATTCATTTTTTTTATCTTT
TCCATCACCTTTATATCATAACTATTTATTTTTTCTCTTCCATTTTCTAT
ACTTTTCCACTCTGTCTTCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_g08.g1 MSMg01no345_g08.g1 CHROMAT_FILE:
MSMg01no345_g08.g1 PHD_FILE: MSMg01no345_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:50 2005
         (405 letters)



>mm_chr9_49440674_49441478
          Length = 805

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaacctcaggtttgctggagtacatccaagcagggtgttcaagaagctgccaggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaacctcaggtttgctggagtacatccaagcagggtgttcaagaagctgccaggctg 260

                                                                       
Query: 61  ggcttccacctgcaagaggctggatgagaacttgatggtcagcctgagtctgagtcacag 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttccacctgcaagaggctggatgaaaacttgatggtcagcctgagtctgagtcacag 320

                                                                       
Query: 121 agacaaatgaggtcctgggcttgagaactagtgtatgtaaaggatgttagctacacaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacaaatgaggtcctgggcttgagaactagtgtatgtaaaggatgttagctacacaggt 380

                                                                       
Query: 181 gctttacccaagactactcatggcacctttgtccaggtcactacaccaactaacacccag 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gctttacccaagactactcatggcacctttgtccaggtcactacgccaactaacacccag 440

                                                                       
Query: 241 gacagcgcctaacctcagtctgtgctctaaccattcacaatcctggtggttaactgctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacagcgcctaacctcagtctgtgctctaaccattcacaatcctggtggttaactgctca 500

                                                                       
Query: 301 caggttgacaaatttatcaatggctataagggtttgatacccaaagtaatttaaacttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggttgacaaatttatcaatggctataagggtttgatacccaaagtaatttaaacttga 560

                                  
Query: 361 agatattttgtgtctgtgtctct 383
           |||||||||||||||||||||||
Sbjct: 561 agatattttgtgtctgtgtctct 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |