BAC Information

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BAC

Clone NameMSMg01-345P02
Chromosome9 (Build37)
Map Location 118,927,125 - 118,927,627
singlet/doubletsinglet
Overlap geneCtdspl
Upstream geneAzi2, 2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768
Downstream geneVill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345P02.T7 (MSMg01no345_p02.b1)MSMg01-345P02.TJ (MSMg01no345_p02.g1)
ACCAG458646AG458647
length752793
length of high quality
(start - end)		503 (117 - 619)67 (118 - 184)
definitionCHROMAT_FILE: MSMg01no345_p02.b1 PHD_FILE: MSMg01no345_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:30 2005CHROMAT_FILE: MSMg01no345_p02.g1 PHD_FILE: MSMg01no345_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTAAACGCTTGATGTTGTCGCGGCGGGACGACTCGCTATTTCCAGAGGA
TCCGCGGAATTCAGTTCCTTACCTTAGTGAAATCTGAGGTGGGGTGTTGT
CTCCATAACGAATGCATGGTCTGTGGAACCCTGTGGGCAGCTGACTCCAG
AGGACCCTCTGCCCTTCACACTGAACCCCACCAGCACCCACAGAACACAA
GGCTAAGCCACATAAATTCCAGACCTGACTCCTGGAGTCTCCAGGGCTCC
CTGCCTTTCTTCGGTCAGCACAGCAGAGAAGATGGAAGGCCCTGGACAGA
AGGGGACAGGTCACTGCTTAGACACCATCCACCCTGAGTATTTACTTCAC
CCTGGGAAAAGGAAGGCTAAGGACCTTTATCAACCTGCTTCTGCAACAGC
AGTTTAAGCTGACAGTCACCAGGCCACCTCGGCTCTACCAGCATCATCCA
GAGACTAAGAGGAGTCCGTCCTGGAAGACTCCAATAGTGGTGACCATGGA
GGACCCCTAAGAGTAAGGCATCATAAAAGAGATTGCCAGAAACACAAATA
CACACATACCCATACATACATACCCCCATATACAACAGCACACACACACA
TATACAATAGCACATACACACACCATATACACCCAATACATACCCCATAT
ACATACACCCCATACCCACACCCCATACCCATACCCATATACAATAACAC
ACCCCCCCCCCATACACTTAATATACACACCTCCTATACCTATACCCCCT
AG

TTTTTCGATGACGTTGTTAGTCCGGGCCGGCGCCGGTGTCCCGCGACGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGCGAGTTGTGATATC
GGGTAGGATTCAAAGGTTGCTATATTTCTGTTTAGATTTTTATTTTATGT
ATGTGAGGACACTGCGGCTGTCTTCAGACACACCACAACAGGGCATCAGA
TCCCATTACAGATGGTTGTGAGCCATCATGTGGTTGCTAACAATTGAACT
CACGACCTCTGGAAGAGCATGCAGTGCTCTTAACTGCTGATACTTCTCTC
CGGGCCCTTCTGTTAAAATTTTTCACTATCTTGTTTCCACTGCTTGGCTG
TGAGGCACCTTGATAGACAGTGAAACAGGTCCGCTCTAGAGAGTGAACTG
TTTCCTGGACTCTGCCCCTGCTGGTAACATGACTATGTTTCTTCCTTTCA
CTTTGACCTGCTGTGTGATCTAATGTACCTGATTAAGACTCCTCACTCTC
TGTACTATGCCTGCCCTCTTTGTTTGGCTCCCTGATCCCTGCACCCGTCC
ACTTACGATATGACTTCCTCTTCCCAACATTTTTTAAAGTTCTCATTTGC
CCCACTCACTTTTCACCTTTCCCCACCTTCAAACATTCAAAACCTAGTAT
ACTTCTTATTTATCTTTTTTTCATTTCTATTTCTTTTTTATTTCTCTCTT
CAACCTTATTCTCCTCTTTTTTAACTGTATTAAAACTTCCTTCATTACCT
CTTATCTTTCGCTAGATATACATGTTATCTCTGTTTTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_p02.b1 MSMg01no345_p02.b1 CHROMAT_FILE:
MSMg01no345_p02.b1 PHD_FILE: MSMg01no345_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:30 2005
         (503 letters)



>mm_chr9_118926925_118927827
          Length = 903

 Score =  926 bits (479), Expect = 0.0
 Identities = 497/503 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtctgtggaaccctgtgggcagctgactccagaggaccctctgcccttcacactgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtctgtggaaccctgtgggcagctgactccagaggaccctctgcccttcacactgaac 260

                                                                       
Query: 61  cccaccagcacccacagaacacaaggctaagccacataaattccagacctgactcctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaccagcacccacagaacacaaggctaagccacataaattccagacctgactcctgga 320

                                                                       
Query: 121 gtctccagggctccctgcctttcttcggtcagcacagcagagaagatggaaggccctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctccagggctccctgcctttcttcggtcagcacagcagagaagatggaaggccctgga 380

                                                                       
Query: 181 cagaaggggacaggtcactgcttagacaccatccaccctgagtatttacttcaccctggg 240
           |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cagaaggggacaggtcactgctcagacaccatccaccctgagtattttcttcaccctggg 440

                                                                       
Query: 241 aaaaggaaggctaaggacctttatcaacctgcttctgcaacagcagtttaagctgacagt 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 aaaaggaaggctaaggacctttatcaacctgcttctgcaacagcaatttaagctgacagt 500

                                                                       
Query: 301 caccaggccacctcggctctaccagcatcatccagagactaagaggagtccgtcctggaa 360
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 caccaggccacctcagctctaccagcagcatccagagactaagaggagtccgtcctggaa 560

                                                                       
Query: 361 gactccaatagtggtgaccatggaggacccctaagagtaaggcatcataaaagagattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactccaatagtggtgaccatggaggacccctaagagtaaggcatcataaaagagattgc 620

                                                                       
Query: 421 cagaaacacaaatacacacatacccatacatacatacccccatatacaacagcacacaca 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 cagaaacacaaatacacacatacccatacatacatacccccatatacaacagtacacaca 680

                                  
Query: 481 cacatatacaatagcacatacac 503
           |||||||||||||||||||||||
Sbjct: 681 cacatatacaatagcacatacac 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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