Query= MSMg01no346_a06.b1 MSMg01no346_a06.b1 CHROMAT_FILE:
MSMg01no346_a06.b1 PHD_FILE: MSMg01no346_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:35 2005
(456 letters)
>mm_chr9_111043543_111044398
Length = 856
Score = 828 bits (428), Expect = 0.0
Identities = 442/448 (98%), Gaps = 4/448 (0%)
Strand = Plus / Minus
Query: 1 cagaagggatacaagtctaagtacatcttactaggacagtcgtatgatgtgaacagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaagggatacaagtctaagtacatcttactaggacagtcgtatgatgtgaacagcagg 386
Query: 61 catgttcctagcaaacgccccacagctagctgacaagcccatgtctgtctcccagcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 catgttcctagcaaacgccccacagctagctgacaagcccatgtctgcctcccagcaccc 326
Query: 121 atgagcatcatttgtacacctcagcacacacctctctggcgatgttactcaaagcttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgagcatcatttgtacacctcagcacacacctctctggcgatgttactcaaagcttcat 266
Query: 181 cttctgcagaaaatcgatcttttaccggcgttcttttccttccagaaccaggagtcccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttctgcagaaaatcgatcttttaccggcgttcttttccttccagaaccaggagtcccca 206
Query: 241 tcttgtttttttaaataattttttaactctgaaaaatgagtttactcgtgttcagcactg 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 tcttgtttttttaaataattttttaactctgaaaaatgagtttac---tgttcagcactg 149
Query: 301 aaa-taaaaaaaaaaaaacagtaagttaggatgttttcattgtgtaatcataaggcttat 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aaattaaaaaaaaaaaaacagtaagttaggatgttttcattgtgtaatcataaggcttat 89
Query: 360 ttaaacattcaactgtaacactgcaattctatttcttctccaagaaatcagtgaaaggat 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ttaaacattcaactgtaacattgcaattctatttcttctccaagaaatcagtgaaaggat 29
Query: 420 tccttttcacactaccaaattacttcag 447
||||||||||||||||||||||||||||
Sbjct: 28 tccttttcacactaccaaattacttcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_a06.g1 MSMg01no346_a06.g1 CHROMAT_FILE:
MSMg01no346_a06.g1 PHD_FILE: MSMg01no346_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:35 2005
(522 letters)
>mm_chr9_110867660_110868581
Length = 922
Score = 978 bits (506), Expect = 0.0
Identities = 518/522 (99%)
Strand = Plus / Plus
Query: 1 tccctttggaaccataagccaaaattttgctttttccctttcaacttttaaacgttttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctttggaaccataagccaaaattttgctttttccctttcaacttttaaacgttttat 260
Query: 61 ttgtgcatatctgtgttttgcttgtacatgtggctatggaccacatgttgcagtgcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgcatatctgtgttttgcttgtacatgtggctatggaccacatgttgcagtgcctga 320
Query: 121 agaggccagaaaaagggtgctggatcccctagaaatggagttacagtgggttattagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggccagaaaaagggtgctggatcccctagaaatggagttacagtgggttattagctg 380
Query: 181 ccgcgtgcatgctgggagatgaacccaggacctctgggagagcaggcagtgctcttaaac 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ccgcgtgcatgctgggagatgaacccagaacctctgggagagcaggcagtgctcttaaac 440
Query: 241 accaggtccctgcaacctcaaactctcttctccaagttttggtcatgatattttattaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaggtccctgcaacctcaaactctcttctccaagttttggtcatgatattttattaca 500
Query: 301 gcaacagaaaagtaactaaagcacgttaacgttaaccctagtgtcgccggggatgaaaga 360
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaacagaaaagtaactaatgaacgttaacgttaaccctagtgtcgccggggatgaaaga 560
Query: 361 actagggaagtgaagccgaccagcaaaccatagcgcaaaccgcggaatactcctgctaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actagggaagtgaagccgaccagcaaaccatagcgcaaaccgcggaatactcctgctaaa 620
Query: 421 gccggaagtggctaagatgagcagaccgccaataaagagcgctcgaaatacaaacactga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccggaagtggctaagatgagcagaccgccaataaagagcgctcgaaatacaaacactga 680
Query: 481 attgctttatgtccgcacacctcttactgttgtttttgcttt 522
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 attgctttatgtctgcacacctcttactgttgtttttgcttt 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
