Query= MSMg01no346_e10.b1 MSMg01no346_e10.b1 CHROMAT_FILE:
MSMg01no346_e10.b1 PHD_FILE: MSMg01no346_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:56 2005
(399 letters)
>mm_chr9_18479061_18479859
Length = 799
Score = 764 bits (395), Expect = 0.0
Identities = 398/399 (99%)
Strand = Plus / Minus
Query: 1 tatttgcacccctcctgtctgtcaggggcaactgagcaactacattatagtccctatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tatttgcacccctcctgtctgtcaggggcaactgagcaactacattatagtccctatagt 540
Query: 61 ggcagggcagggatcattattgagacaaaagaaaacaaggtggcagttgtgggctactat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggcagggcagggatcattattgagacaaaagaaaacaaggtggcagttgtgggctactat 480
Query: 121 aaagctcagtcttcatcttcatttctcctggcaactagacagttcccacccaggaatgct 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaagctcagtcttcatcttcatctctcctggcaactagacagttcccacccaggaatgct 420
Query: 181 gcctgcctctcactcccacacatacctaactgaagtatactctgtaggagttgtaccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcctgcctctcactcccacacatacctaactgaagtatactctgtaggagttgtaccttc 360
Query: 241 cccagaggagagtccaccccattcctatctggtggtaccagtctctaagtgagaggctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cccagaggagagtccaccccattcctatctggtggtaccagtctctaagtgagaggctgt 300
Query: 301 cgggtaaaatgtggttaaaaaaaatgaaaaagaatagctgtgtaccagaggctcctctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgggtaaaatgtggttaaaaaaaatgaaaaagaatagctgtgtaccagaggctcctctgt 240
Query: 361 cctccttcaaactcagatagattagcatagatatcttgg 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cctccttcaaactcagatagattagcatagatatcttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_e10.g1 MSMg01no346_e10.g1 CHROMAT_FILE:
MSMg01no346_e10.g1 PHD_FILE: MSMg01no346_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:56 2005
(495 letters)
>mm_chr9_18331972_18332866
Length = 895
Score = 789 bits (408), Expect = 0.0
Identities = 472/496 (95%), Gaps = 7/496 (1%)
Strand = Plus / Plus
Query: 1 tcacaaaattaaccacaaatggcggagaaaaattttttaaaaataagtccaatatcccta 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 tcacaaaattaaccacaaatggcggagaaaaattttttaaaaataaatccaatatcccta 264
Query: 61 tttgtcagggaaaata-ttaaaacttctttaaactttcatattacccctatcaaaatgac 119
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtcagggaaaaaaattaaaacttctttaaactttcatattacccctatcaaaatgac 324
Query: 120 taagatccagaaaactaaaaaacaaaacaaagcaaacaaaacaaaacaaagcaaacaaat 179
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 325 taagatccagaaaactaaaaaacaaa-----gcaaacaaaacaaaacaaagcaaaaaaat 379
Query: 180 aataaaaattggcatggtttatgatggaagaggaaaagtaattcccttttagtgggggtg 239
||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 aataaaaattggcattgtttgtgatggaagaggaaaaataattcccttttagtgggggtg 439
Query: 240 taactactacagaaaaaaatgtagatattcctaaaaatactggaaataaatctagtataa 299
|||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct: 440 taactactccagaaaaaaatgtagatatacctaaaaatactggaaataaatttagaataa 499
Query: 300 gaatcagtgtattcttgagaatatacacaaaggagactatatgctactattgaggaacat 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 gaatcagtgtattcttgagaatatacgcaaaggagactatatgctactattgaggaacat 559
Query: 360 gctgctctattcacaatatttagaaatttgaaacatttagatgcacattaactaatgtat 419
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 560 gctgctctattcacaatatttagaa-tttgaaacatttagatgcgcattaactaatgtat 618
Query: 420 agataataaaaatatagtatgtttatacaatattattaagtttgcaagcatactacaatt 479
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct: 619 agataataaaaatatagtatgtttatacaatattattaaatttgcgagtatactacaatt 678
Query: 480 atcatactctctgagt 495
|||| | |||||||||
Sbjct: 679 atcaaaatctctgagt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
