Query= MSMg01no346_l18.b1 MSMg01no346_l18.b1 CHROMAT_FILE:
MSMg01no346_l18.b1 PHD_FILE: MSMg01no346_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:30 2005
(558 letters)
>mm_chr9_85842566_85843528
Length = 963
Score = 984 bits (509), Expect = 0.0
Identities = 545/559 (97%), Gaps = 5/559 (0%)
Strand = Plus / Minus
Query: 5 gaattcagatttttgcttaaaaaattgagattatactttagttaca-tccccccccc--- 60
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 763 gaattcagatttttgtttaaaaaattgagattatactttagttacattccccccccccaa 704
Query: 61 -aaaaaacccttccatatacacctcccttatctccttttaattcactttttcagattcta 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aaaaaaacccttccatatacacctcccttatctccttttaattcactttttcagattcta 644
Query: 120 ttgcaagttttgtccctaggtgtatgatactctctttaaagtcttttttagtctcttcaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttgcaagttttgtccctaggtgtatgatactctctttaaagtcttttttagtctcttcaa 584
Query: 180 atggtcacccaacaaatattttaacactgacagatgtgtttatttatgtgtactgtgaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atggtcacccaacaaatattttaacactgacagatgtgtttatttatgtgtactgtgaag 524
Query: 240 tgtaaaaaaacaaacaagcaaccatgtttcttatcacatcttgtaggaaggcaagctgaa 299
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgtaaaaaaacaaacaagcaaacatgtttcttatcacatcttgtaggaaggcaagctgag 464
Query: 300 ctgtagaaaacatttgtgagaaattagctgaaaaggtgagaagtgtttgcctatattctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctgtagaaaacatttgtgagaaattagctgaaaaggtgagaagtgtttgcctatattctg 404
Query: 360 ctggcttgccctgtctgcactgctaatgaatagcacggaggagtggcacctgtagtcttg 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 403 ctggcttgccctgtctgcactgctaatgaatagcacagaggagtggcacctgtagtcttg 344
Query: 420 gaccagaccaggaaatgtacctaagcctgctgaattgggaggtctcctccaggtgaagac 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 343 gaccagaccaggaaatgtacctaagcctgctgaattgggagatctcctccaggtgaagac 284
Query: 480 taccaatgaaacttagggactaaggaagattcactcaacccatatactaaggcagactca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 283 taccaatgaaacttagggactaaggaagattcactcaacccatatactaaggcagacgcg 224
Query: 540 cgtaggtcacgtgagtgtg 558
|| |||||||||||||||
Sbjct: 223 tgtgggtcacgtgagtgtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 963
Length adjustment: 10
Effective length of query: 548
Effective length of database: 953
Effective search space: 522244
Effective search space used: 522244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_l18.g1 MSMg01no346_l18.g1 CHROMAT_FILE:
MSMg01no346_l18.g1 PHD_FILE: MSMg01no346_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:30 2005
(446 letters)
>mm_chr9_85694235_85695080
Length = 846
Score = 833 bits (431), Expect = 0.0
Identities = 440/443 (99%)
Strand = Plus / Plus
Query: 1 agactgaaagggaagagcgttcttgtctaatgccttcatttcacagatgaggaaacacag 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactgaaagggaagagcattcttgtctaatgccttcatttcacagatgaggaaacacag 260
Query: 61 gctctgagaagtgcccccaaggttatataaagttttggtgaagaaaggagtagaaataag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctgagaagtgcccccaaggttatataaagttttggtgaagaaaggagtagaaataag 320
Query: 121 gtcttaagtcttgattagacaagtttttatttatttatttattcatttatttatttattt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gtcttaagtcttgattagacaagtttttttttatttatttattcatttatttatttattt 380
Query: 181 taccttttgtggggctctggagtttctaattgcttctcaaaatgttgttcccatctgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccttttgtggggctctggagtttctaattgcttctcaaaatgttgttcccatctgttt 440
Query: 241 aaatgccacaaaggggagaagaaaatgtaatgggccgaactggacaaaggtaagtttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgccacaaaggggagaagaaaatgtaatgggccgaactggacaaaggtaagtttttt 500
Query: 301 ttctttctgcagaatctaagaccaatggtgttcaatcttcctaacgctgtgactatttaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctttctgcagaatctaagaccaatggtgttcaatcttcctaacgctgtgactatttag 560
Query: 361 tacaattcctcatgtgtggtgatccccagccataaaataattttcattgctacttcataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaattcctcatgtgtggtgatccccagccataaaataattttcattgctacttcataa 620
Query: 421 tggaaaatttgctactgttatga 443
|||||||||||||||||||||||
Sbjct: 621 tggaaaatttgctactgttatga 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
