Query= MSMg01no346_n14.b1 MSMg01no346_n14.b1 CHROMAT_FILE:
MSMg01no346_n14.b1 PHD_FILE: MSMg01no346_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:38 2005
(503 letters)
>mm_chr9_8155939_8156841
Length = 903
Score = 857 bits (443), Expect = 0.0
Identities = 467/475 (98%), Gaps = 1/475 (0%)
Strand = Plus / Minus
Query: 1 aattaatccaaagatgtttgttgctcacccattacatttaataggtttttagtacttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aattaatccaaagatgtttgttgctcacccattacatttaataggtttttagtacttctt 416
Query: 61 gaataaaaaacaatagaattctgcagattttctttatgagaaaaaatgacttttacattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gaataaaaaacaatagaattctgcagattttctttatgagaaaaaatgacttttacattg 356
Query: 121 ttatatagaagaatgtaatataatgttttataatgttatataaaatgttacagggaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttatatagaagaatgtaatataatgttttataatgttatataaaatgttacagggaaaat 296
Query: 181 aatgaatttcattgatttgggataaatagagaatagtatctcaatttatctaaatgtata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatgaatttcattgatttgggataaatagagaatagtatctcaatttatctaaatgtata 236
Query: 241 actatatattttagttaatatatatttggttaagacaccagaaatatagctcggtgggta 300
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 235 actatatattttagttaatatatatttggttaagagaccagaaatatagctcagtgggtg 176
Query: 301 aagtacctggcacaaatttgaaaccctgaattcaattcctaggacccacatggtagaagg 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aagtgcctggcacaaatttgaaaccctgaattcaattcctaggacccacatggtagaagg 116
Query: 361 gaaaaactgacacctgaaaattgtactctcacccccacatgtgtgtcccggtatgtgggt 420
||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 115 gaaaaactggcacctgaaaattgtactctgacccccacatgtgtgtcccagtatgtgggt 56
Query: 421 gcacacacacactaaatataaagtaataagt-aataaatgtaaaaacaagattct 474
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 55 gcacacacacactaaatataaagtaataagtaaataaatgtaaaaacaagattct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_n14.g1 MSMg01no346_n14.g1 CHROMAT_FILE:
MSMg01no346_n14.g1 PHD_FILE: MSMg01no346_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:38 2005
(495 letters)
>mm_chr9_7945778_7946672
Length = 895
Score = 934 bits (483), Expect = 0.0
Identities = 495/503 (98%), Gaps = 8/503 (1%)
Strand = Plus / Plus
Query: 1 accatgtagaccaggctggccctgaactaattaaataaacctaggatttatgaaaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accatgtagaccaggctggccctgaactaattaaataaacctaggatttatgaaaaatta 260
Query: 61 ggaattccaagagaaaagagataatgttgaagaaagtgttaaagaattgtaaattatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaattccaagagaaaagagataatgttgaagaaagtgttaaagaattgtaaattatgat 320
Query: 121 ttctgatgtccgttaacttggaagacagttttgagttgggggaagtcaaattctttgcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgatgtccgttaacttggaagacagttttgagttgggggaagtcaaattctttgcta 380
Query: 181 ctaaattttcaagaaagaaatgtctttggcaattatttttacatggttctgaacagtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaattttcaagaaagaaatgtctttggcaattatttttacatggttctgaacagtgat 440
Query: 241 ttgattttgcgtaaattgtttgcttaaaaatatagagcagcacagccgggcgtggtgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgattttgcgtaaattgtttgcttaaaaatatagagcagcacagccgggcgtggtgcct 500
Query: 301 cacgcctttaatcccagcactcaggaggcagaggcaggtggatttctgagtttgaggcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacgcctttaatcccagcactcaggaggcagaggcaggtggatttctgagtttgaggcca 560
Query: 361 gaggtctacagagtaagttccaggacagccagggctacacagagaaaccctgtctcgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggtctacagagtaagttccaggacagccagggctacacagagaaaccctgtctcgaaa 620
Query: 421 aacc-a-------atatatatatatatatatatatatatatatatggcagctgaaccttt 472
|||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacctatatatatatatatatatatatatatatatatatatatatggcagctgaaccttt 680
Query: 473 tttctatcaagtgttaatgtaca 495
|||||||||||||||||||||||
Sbjct: 681 tttctatcaagtgttaatgtaca 703
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 426 atatatatatatatatatatatatatatatat 457
||||||||||||||||||||||||||||||||
Sbjct: 657 atatatatatatatatatatatatatatatat 626
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 426 atatatatatatatatatatatatatatatat 457
||||||||||||||||||||||||||||||||
Sbjct: 659 atatatatatatatatatatatatatatatat 628
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 426 atatatatatatatatatatatatatatatat 457
||||||||||||||||||||||||||||||||
Sbjct: 661 atatatatatatatatatatatatatatatat 630
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 426 atatatatatatatatatatatatatatatat 457
||||||||||||||||||||||||||||||||
Sbjct: 663 atatatatatatatatatatatatatatatat 632
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 426 atatatatatatatatatatatatatatatat 457
||||||||||||||||||||||||||||||||
Sbjct: 665 atatatatatatatatatatatatatatatat 634
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 426 atatatatatatatatatatatatatatata 456
|||||||||||||||||||||||||||||||
Sbjct: 655 atatatatatatatatatatatatatatata 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
