Query= MSMg01no347_d08.b1 MSMg01no347_d08.b1 CHROMAT_FILE:
MSMg01no347_d08.b1 PHD_FILE: MSMg01no347_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:06 2005
(249 letters)
>mm_chr9_121238318_121238966
Length = 649
Score = 429 bits (222), Expect = e-125
Identities = 243/250 (97%), Gaps = 2/250 (0%)
Strand = Plus / Plus
Query: 1 ctgttcgtacattgtgatacagagttagctgctctgggagtgtcgggacttgagtaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttcgtacattgtgatacagagttagctgctctgggagtgtcgggacttgagtaatgc 260
Query: 61 tggcccaggcgtatggctggctgcttcatacccattctctctgacgactgcacggatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tggcccaggcgtatggctggctgcttcatacccattctctctgacgactacacggatcct 320
Query: 121 ccctctttcttccatgagctcctggaggtcaggggcctgtcctccccagctctcgctgca 180
||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||
Sbjct: 321 ccctctttcttccataagctcctggaggtcagggtcctgccctccccagctctcactgca 380
Query: 181 gtgt-tgggtgccccagatgttgaaggagcgtgggggcagggtggggtgagtctgggagt 239
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtctgg-tgccccagatgttgaaggagcgtgggggcagggtggggtgagtctgggagt 439
Query: 240 gatgagcaga 249
||||||||||
Sbjct: 440 gatgagcaga 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no347_d08.g1 MSMg01no347_d08.g1 CHROMAT_FILE:
MSMg01no347_d08.g1 PHD_FILE: MSMg01no347_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:07 2005
(487 letters)
>mm_chr9_121436630_121437516
Length = 887
Score = 671 bits (347), Expect = 0.0
Identities = 356/359 (99%)
Strand = Plus / Minus
Query: 1 aatgcaggagccagagcaaatcgaaaaccactgattctcagagtgtaaagccacaggctg 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aatgcaggagccagagcgaatcgaaaaccactgattctcagagtgtaaagccacaggctg 300
Query: 61 agctgcagaatcagcagagactcactgatgaaaatttacagttgaagccttttcaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agctgcagaatcagcagagactcactgatgaaaatttacagttgaagccttttcaaagaa 240
Query: 121 gtaaaagctgacgttctgtgaagaatgtaacctgtcaccagtcactcttcctcctatgac 180
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 239 gtaaaagctaacgttctgtgaagagtgtaacctgtcaccagtcactcttcctcctatgac 180
Query: 181 aaaatgcctgacaagaagcaacccatgggaagatttacttttgctcacggtctgagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aaaatgcctgacaagaagcaacccatgggaagatttacttttgctcacggtctgagagga 120
Query: 241 cacagtctgtcttaaccagagtttctattccttcacaaaacataatgacaaagaagcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cacagtctgtcttaaccagagtttctattccttcacaaaacataatgacaaagaagcaag 60
Query: 301 ctggggaggaaagggtttattaggcttactcttccacattgctgctcatcaccaaggga 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 ctggggaggaaagggtttattaggcttactcttccacattgctgctcatcaccaaggga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
