Query= MSMg01no347_g14.b1 MSMg01no347_g14.b1 CHROMAT_FILE:
MSMg01no347_g14.b1 PHD_FILE: MSMg01no347_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:23 2005
(489 letters)
>mm_chr9_120943886_120944774
Length = 889
Score = 909 bits (470), Expect = 0.0
Identities = 482/486 (99%)
Strand = Plus / Plus
Query: 4 ggaattcacagcagttccccaacagaagggtgactgacctctgggttcagtgtgggatgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacagcagttccccaacagaagggtgactgacctctgggttcagtgtgggatgg 263
Query: 64 tctagtcatttgtttgcttactatagtattggaaatgtaaggtattttttcaagaaatcg 123
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 tctagtcatttgtttgcttattatagtattggaaatgtaaggtatttttccaagaaatcg 323
Query: 124 tatgttttggggagcagaataaaatggtcatatggtggctggagagactgctcaaaagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatgttttggggagcagaataaaatggtcatatggtggctggagagactgctcaaaagat 383
Query: 184 aaagagcactggctgttcttgcagaagacctgggctcagtcccctgcatccacgtggcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagagcactggctgttcttgcagaagacctgggctcagtcccctgcatccacgtggcag 443
Query: 244 ctcacaaccatctgtaactccagctccaggagatctgacccccttcttctgacctccaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcacaaccatctgtaactccagctccaggagatctgacccccttcttctgacctccaca 503
Query: 304 ggcaatgtataaatgaggtgcagatatacacacagaaaaacactcacacacaagcacaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggcaatgtataaatgaggtgcagatatacacacagaaaaacactcacacacaagcacaca 563
Query: 364 cgtgaaataaaagcaattaaaaaggggcacatacgtttggtctgagtaaacacagatggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cgtgaaataaaagcaattaaaaaggggcacatacgtttggtctgagtaaacacagatggg 623
Query: 424 ctctgacttacactcattcttcctaagctctgagtctttccgtggtgtaacactgataca 483
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 624 ctctgacttacactcattcttcctaagctctgggtctttccgtggtgtaacactgataca 683
Query: 484 tgggca 489
|||||
Sbjct: 684 cgggca 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_g14.g1 MSMg01no347_g14.g1 CHROMAT_FILE:
MSMg01no347_g14.g1 PHD_FILE: MSMg01no347_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:23 2005
(485 letters)
>mm_chr9_120999448_121000331
Length = 884
Score = 891 bits (461), Expect = 0.0
Identities = 479/485 (98%), Gaps = 1/485 (0%)
Strand = Plus / Minus
Query: 1 ctgttgcctcacctgggttaataaggaatggcgtctgggtcttagttaaacactcaggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgttgcctcacctgggttaataaggaatggcgtctgggtcttagttaaacactcaggac 625
Query: 61 tccttagtgaggcggcctccgctctgggttgtcagacttgtctccctgctgtgtgagcct 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccttagcgaggcggcctccgctctgggttgtcagacttgtctccctgctgtgtgagcct 565
Query: 121 atcaggcttgcaggagccatctccggcatacctccctcagcttcaagcagggagcatcag 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 atcaggcttgcaggagccatct-cggcatacctccctcagcttcaagcagggagcatcag 506
Query: 181 agaactttaggtggaggctttggggagcaccatgcacacttctgagtggctcttcattcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 agaactttaggtggaggctttggggagcaccatgcacacttctgagtggcccttcattcc 446
Query: 241 tctacctttaacccttcacttcctgagctccagcccagctcccctctcagaggaagacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctacctttaacccttcacttcctgagctccagcccagctcccctctcagaggaagacac 386
Query: 301 tctgctcaggcctgtcaccctagacttgtcccggaaagttcaactgcatctgaagctgca 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 tctgctcaggcctgtcaccctagacttgtcccggaaagttcaactacatctgaagctgca 326
Query: 361 ggagtgagggagctgcatcaaagtttccccttcctggggtcagagccctgacaggttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggagtgagggagctgcatcaaagtttccccttcctggggtcagagccctgacaggttcct 266
Query: 421 gtctcatgtctgaggaaccgttgtctctggtacttgatctagaggctagcatcatgtatg 480
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 265 gtctcatgtctgaggaaccgttctctctggtacttgatctagaggctagcgtcatgtatg 206
Query: 481 acaga 485
|||||
Sbjct: 205 acaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space: 415150
Effective search space used: 415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
