BAC Information

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BAC

Clone NameMSMg01-347J18
Chromosome9 (Build37)
Map Location 20,794,008 - 20,794,342
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5
Downstream geneMrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347J18.T7 (MSMg01no347_j18.b1)MSMg01-347J18.TJ (MSMg01no347_j18.g1)
ACCAG459910AG459911
length809776
length of high quality
(start - end)		350 (45 - 394)336 (80 - 415)
definitionCHROMAT_FILE: MSMg01no347_j18.b1 PHD_FILE: MSMg01no347_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:38 2005CHROMAT_FILE: MSMg01no347_j18.g1 PHD_FILE: MSMg01no347_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGTCTCCAGTTAGTGTAGCTGCTTGGGAAGGCTTGGGAGGTGTA
GCCTTGCTGGAGAGCGCGCATCACTGGGAGCGGGCTTTAAGAGTTGAGCT
TCAGATATTCCTCGCTTACCGTTTCCTGCCTGTGGTTACAGATGTTACTT
CACAGCTCTACCAGCCGCATGCCTGGGGCTTTCCTCTGTGCTTTAAGCCA
TCATGGTGGTGAATTCCTCCCCTCTGAAACCCTAAGCCCCAAATAAACTT
GCCTTCTGTGAACTGCCTTGGTCATGGTGTTTTATCACAGCAATAGAAAA
GTTTCTAGAGCAGCCAGTGGTGGCGCACGTCTTTAATCTCAGCACTCAGG
AGGCAGTGGCAGGTGAGTCTGACTTCTAGGACAGTCAGGGTCACACAGAG
ATACCCTTTCTCTTAAGATAGACAGAGAGGTCTGATTCCTGATTAATAAT
CCTATAGCTTGCAATCTGCCTTTCTGTTTTACATTCCTGTCTTTTCTTTC
TTTAGTTTTTGACTTTCTTTCCCCCTACCCTTCTTTTCCCTTATTTTTTC
CCTTTTTTTCGTTCTTACCCATCTCCCTTTTTTTCCCCTTTCCTTATTCC
CCTTACCCTTTTCCCTCCCCTTTTCTCTTTCCTCTTTCTTTCCTTTCCTT
TCCCCCCCCCTCCTTCTCTCCCACTTTCTTCCCCTTCCTCCTTTTCTTCC
TCCTTTCATTCCCCCCTTCCTTTTTCCTTTTCTCCCTTTTATTTTTTCCT
TTCTTTTTN

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATCCTATCTTCATCCCCC
AGCTGCGGGGCTCCAGGTGTGCACCACCACGCTTATTTTGTATTAAGCAC
GTAATGGATGCCAAGCACCTGTCTTATCCACCAACTGTGGCCCAGTCTTG
GAAGAAACAAAATCCCCCGTCTTGGAGAGGCTAATTTCCTAGTGGCAGAA
AAACAAATCAGAAACAGTAAAAGACCAGGCATCCCAGCACTCCAGAGGCT
GAGGTTAGGGTTAGCAGTTCTAAGCTACCTAGTGAAAGTAAAAGTAGGCT
GGAAGATAGGGGTAAGGAGGTGAAGGCAGCGGGACGCTGAGTTTCATCCT
TGGTATGGAAGAAGAAGAANAGGTGGAGAGATGGCTCACCGGGTAAAGAC
TCGCTGGGCAAGCCTGCCAGCCTGATCCACATGTGGTGGTACACTCCTGT
CACCCAGCACTTGGCACGCTAACAATGTGGATCTCCAGGGCTGGGGGAAA
AGTTTGTCTAATCAAAAACACGCTTTCTGGGTTCCTGGTAAAAACTCATT
TGATACAACTATTAGCGCCTCTTTTCCCACTGTCTCTCTTTATAAAGTTG
GTTCTCAACTTCCTCCCAAACTCTAGGTTTTTTTTCCCTCTACACCCACC
TCCTCCTTTATTATTACCCTCCTTCCCTCCTTTTTTTTCTCCTCTAGCTT
ATCCCTCGCCTTTTTATTTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_j18.g1 MSMg01no347_j18.g1 CHROMAT_FILE:
MSMg01no347_j18.g1 PHD_FILE: MSMg01no347_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:38 2005
         (336 letters)



>mm_chr9_20793808_20794544
          Length = 737

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%), Gaps = 1/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttatcctatcttcatccccc-agctgcggggctccaggtgtgcaccaccacgcttattt 59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cttatcctatcttcatccccccagctgcggggctccaggtgtgcaccaccatgcttattt 260

                                                                       
Query: 60  tgtattaagcacgtaatggatgccaagcacctgtcttatccaccaactgtggcccagtct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtattaagcacgtaatggatgccaagcacctgtcttatccaccaactgtggcccagtct 320

                                                                       
Query: 120 tggaagaaacaaaatcccccgtcttggagaggctaatttcctagtggcagaaaaacaaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaagaaacaaaatcccccgtcttggagaggctaatttcctagtggcagaaaaacaaat 380

                                                                       
Query: 180 cagaaacagtaaaagaccaggcatcccagcactccagaggctgaggttagggttagcagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaaacagtaaaagaccaggcatcccagcactccagaggctgaggttagggttagcagt 440

                                                                       
Query: 240 tctaagctacctagtgaaagtaaaagtaggctggaagataggggtaaggaggtgaaggca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaagctacctagtgaaagtaaaagtaggctggaagataggggtaaggaggtgaaggca 500

                                              
Query: 300 gcgggacgctgagtttcatccttggtatggaagaa 334
           || ||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggacgctgagtttcatccttggtatggaagaa 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 737
Length adjustment: 9
Effective length of query: 327
Effective length of database: 728
Effective search space:   238056
Effective search space used:   238056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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