Query= MSMg01no348_f04.b1 MSMg01no348_f04.b1 CHROMAT_FILE:
MSMg01no348_f04.b1 PHD_FILE: MSMg01no348_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:34 2005
(619 letters)
>mm_chr9_116926777_116927795
Length = 1019
Score = 880 bits (455), Expect = 0.0
Identities = 519/559 (92%), Gaps = 31/559 (5%)
Strand = Plus / Minus
Query: 6 gatccaatagttgaagatagctaaggcatgtccttcccttctctcca------------- 52
|||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 558 gatccaatagttgaagttagctaaggcatgtccttcccttctctccatctctcctccctc 499
Query: 53 --------tccct---------cctccctcctctccttccctccctctgtctctccttcc 95
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttctttcttccctcctgctctgcctccctcctctccttccctccctctgtctctccttcc 439
Query: 96 ttaccttcctccctccatgtattcttctctcctggttctgatgaggagttcacctctaac 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttaccttcctccctccatgtattcttctctcctggttctgatgaggagttcacctctaac 379
Query: 156 tctctttttctacgttttcatttcctcttatctactcttcctctatccctccctcttatc 215
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 378 tctctttttctacgttttcatttcctcttatctacacttcctctatccctccctcttatc 319
Query: 216 tcttcttctttcttcttcctaccttccctttccttccccttcctcccttctccctccctt 275
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 318 tcttcttctttcttcttccttccttccctttccttcaccttcctcccttctccctccctt 259
Query: 276 ccttttcatctttctgtttccatccttctttccttctcttcctttccttccttcctcccc 335
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 258 ccttttcttctttctgtttccatccttctttccttctcttcctttccttccttcctctcc 199
Query: 336 tttacttccttccttccttattccctcttctgtccttccttctttcctcatttctttctc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tttacttccttccttccttattccctcttctgtccttccttctttcctcatttctttctc 139
Query: 396 tcaactttgacattttgtgtaagtatatagttttacgtcattatattgtatgttgtacaa 455
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 138 tcaactttgacattttgtgtaagtatatagttttacatcattatattgcatgttgtacaa 79
Query: 456 ccctgcctctgctccccctttccctgccccctcactagtcaccttgtcctcctcgacttt 515
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ccctgcctctgctcccc-tttgcctgccccctcactagtcaccttgtcctcctcgacttt 20
Query: 516 tctattcttccatgtcaga 534
|||||||||||||||||||
Sbjct: 19 tctattcttccatgtcaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_f04.g1 MSMg01no348_f04.g1 CHROMAT_FILE:
MSMg01no348_f04.g1 PHD_FILE: MSMg01no348_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:34 2005
(503 letters)
>mm_chr9_116924855_116925757
Length = 903
Score = 839 bits (434), Expect = 0.0
Identities = 491/520 (94%), Gaps = 18/520 (3%)
Strand = Plus / Plus
Query: 1 tcctgtctttgtttcatgtccaaccataagacttctggtatgatgtgtacccttgcatcc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tcctgtctttgtttcgtgtccaaccataagacttctggtatgatgtgtacccttgcatcc 250
Query: 61 agatgttttcatgtggattctgctgagaagatacgggattcagattttcagccttgagtg 120
|||||||| |||||||||||||||||| ||| || |||||||||||||||| ||| ||||
Sbjct: 251 agatgtttgcatgtggattctgctgaggagagacaggattcagattttcaggcttcagtg 310
Query: 121 gatagggtattgagacagggagccaaccataccacgacctgtgtcagaggaattctaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gatagggtattgagacagggagccaaccataccacgacctgtgtcagaggaattctaaac 370
Query: 181 actgacttgttctgtgaaacacaaactcagaagtgtgatggcttcggctgtggtctgttt 240
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 371 actgacttgttctgtgaaacacaaactcagaagtgtgatggcttcagctgtagtctgttt 430
Query: 241 tcagaaggaatgcatgctaacaaaaggatagctctggtttaaactcagttgtatttc--- 297
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 431 tcagaaggaatgcatgctaacaaaaggacagctctggtttaaactcagttgtatttctga 490
Query: 298 -------agacctgttttgcctctcttaatgcctcccagttcttgagtttgagagaaaaa 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atgtagcagacctgttttgcctctcttaatgcctcccagttcttgagtttgagagaaaaa 550
Query: 351 cagacaccaagcattaaatatctgatattttaacccaggaggtctggctataaagaagac 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagacaccaagcattaaatatctgatattttaacccaggaggtctggctataaagaagac 610
Query: 411 gatgtctccattctcaaacaaaa-------tggaaacgtcaatagatctttcttcttgct 463
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 611 gatgtctccattctcaaaaaaaaaaaaaaatggaaacgtcaatagatctttcttcttgct 670
Query: 464 gtttggtttacgtatgtgtgttcgtgtgaatgctggtaca 503
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 671 gtttggtt-acgtatgtgtgttcgtgtgaatgctggtaca 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
