Query= MSMg01no348_f11.b1 MSMg01no348_f11.b1 CHROMAT_FILE:
MSMg01no348_f11.b1 PHD_FILE: MSMg01no348_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:36 2005
(456 letters)
>mm_chr9_61397921_61398776
Length = 856
Score = 828 bits (428), Expect = 0.0
Identities = 449/456 (98%)
Strand = Plus / Plus
Query: 1 tggtttgaaaatatttggaaaaaaacatattgggtttgtattgaagaagcactggccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtttgaaaatatttggaaaaaaacatattgggtttgtattgaagaagcactggccctc 260
Query: 61 tcccttactatcctctagcagagcatttaaacataatagcacaactatttatgtcccatc 120
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tcccttactatcctttagcagagcatttaaacataatagcacaactatttacgtcccatc 320
Query: 121 atgtcattttattggggtagcttaaggagtgtggagatgctgtgaagggtgagaggaagt 180
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtcgttttattggggtagcttatggagtgtggagatgctgtgaagggtgagaggaagt 380
Query: 181 aaagagatatgcaaatcatatgcaaatataacaccacctcagaggaggggcttcaggatc 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 381 aaagagatatgcaaatcatatgcaaatatagcaccacctcagaggaggggcttcaggacc 440
Query: 241 tgtggctttgccatccatcatggagactatggatggaggttaatatacagttagggaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggctttgccatccatcatggagactatggatggaggttaatatacagttagggaaat 500
Query: 301 cattgtgtcatcaggccaagagctcactgacagtggtccctaggtgggcctatgtgtagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattgtgtcatcaggccaagagctcactgacagtggtccctaggtgggcctatgtgtagg 560
Query: 361 acacataagctattgtgtctaaggtcctaagctaagggtaggaccatggatatcggtgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacataagctattgtgtctaaggtcctaagctaagggtaggaccatggatatcggtgaa 620
Query: 421 gttaagaaagggaggaaaggagctaaaacctgcctg 456
||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttaagaaagggaggaaaggagctaaaacctgcctg 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_f11.g1 MSMg01no348_f11.g1 CHROMAT_FILE:
MSMg01no348_f11.g1 PHD_FILE: MSMg01no348_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:36 2005
(454 letters)
>mm_chr9_61537177_61538032
Length = 856
Score = 820 bits (424), Expect = 0.0
Identities = 448/456 (98%), Gaps = 2/456 (0%)
Strand = Plus / Minus
Query: 1 tctggggtgggacctaattagggtgcaatttttcaattatggaacactgagcaagccctt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tctggggtgggagctaattagggtgcaatttttcaattatggaacactgagcaagccctt 597
Query: 61 ccccactccct-ccccaccccccaaacacatcatcccaccctggatgtgctccatttgtc 119
||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 596 ccccactccctccccccccccccaaacacaccatcccaccctggatgtgctccatttgtc 537
Query: 120 tactttccttgatttcttaatcatttcatgatctgacagcaattatttgtcatttgaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tactttccttgatttcttaatcatttcatgatctgacagcaattatttgtcatttgaaaa 477
Query: 180 cgaaaattgtcagggagccactgtctccccccttggaaggcccctgtcttcctaggtggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cgaaaattgtcagggagccactgtctccccccttggaaggcccctgtcttcctaggtggc 417
Query: 240 aagtgtttaggcttgctttgatcaatggttttcattcctgccctt-cccccactcctgtc 298
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 416 aagtggcaaggcttgctttgatcaatggttttcattcctgcccttccccccactcctgtc 357
Query: 299 ctgagttgggttggcaacaggaaaacattagctggtgacgtgggcctgctgggatggaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctgagttgggttggcaacaggaaaacattagctggtgacgtgggcctgctgggatggaaa 297
Query: 359 cccgtttgtagggaggaatggaaaagagctccagttgaaaggagtcccacccagggctcc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cccgtttgtagggaggaatggaaaagagctccagttgaaaggagtcccacccagggctcc 237
Query: 419 aggcccacccacgtcacccaggtcgagagtgtggaa 454
||||||||||||||||||||||||||||||||||||
Sbjct: 236 aggcccacccacgtcacccaggtcgagagtgtggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 856
Length adjustment: 10
Effective length of query: 444
Effective length of database: 846
Effective search space: 375624
Effective search space used: 375624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
