Query= MSMg01no348_i21.b1 MSMg01no348_i21.b1 CHROMAT_FILE:
MSMg01no348_i21.b1 PHD_FILE: MSMg01no348_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:53 2005
(593 letters)
>mm_chr9_80201705_80202695
Length = 991
Score = 1015 bits (525), Expect = 0.0
Identities = 573/591 (96%), Gaps = 6/591 (1%)
Strand = Plus / Minus
Query: 5 gaattcagcatggtttctttaaaagaaggaaagaaagcgtatgtgcatatctcattctcc 64
||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaattcagcgtggtttttttaaaggaaggaaagaaagcgtatgtgcatatctcattctcc 732
Query: 65 tgatcaacactggtcaggggtcctggtccttgcagccttgaggctggatcttctaactgc 124
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 731 tgatcaacactggtcaggggtcctggtccttgcagctttggggctggatcttctaactgc 672
Query: 125 aaatgtgatcacttggagaaacacataactagacggatacttcaagtactcagtaattca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaatgtgatcacttggagaaacacataactagacggatacttcaagtactcagtaattca 612
Query: 185 catcatcaagaagtacagagaatatgatcagtttggagtttataagatgtctgaggacaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tatcatcaagaagtacagagaatatgatcagtttggagtttataagatgtctgaggacaa 552
Query: 245 gtgaaaacagcaatccaaagtcatttgtagaacatttacagcatagcaggagtcaaatag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgaaaacagcaatccaaagtcatttgtagaacatttacagcatagcaggagtcaaatag 492
Query: 305 atatttcctcccaccgcaccctccacccaggtcttcagctacagacatgggactaacgtg 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 491 atatttcctcccaccgcaccctccacccaggccttcagctacagacatgggactaacatg 432
Query: 365 gtagggaagtatggatgaggtgcccccaggatttaggaataaaagcccgagcttattaag 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 431 gtagggaagtatggatgaggtg-ccccaggatttaggaataaaagcccgagcttattaag 373
Query: 425 ttgattttaggatatatccgttctgtggtgaacatggggggg--cgctcagctcagaagt 482
|||||| |||||||||||| ||||||||| ||||| |||| ||||||||||||||||
Sbjct: 372 ttgattctaggatatatccattctgtggtaaacat---ggggaacgctcagctcagaagt 316
Query: 483 tttattgacaaataggactgcatacatctaacatgtatagtatgacatctaagtatattc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttattgacaaataggactgcatacatctaacatgtatagtatgacatctaagtatattc 256
Query: 543 atacacacacatataaacagttcggttgaaataattaatatatgcattacc 593
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 255 atacacacacatatgaacagttcggttgaaataattaatatatgcattacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 991
Length adjustment: 10
Effective length of query: 583
Effective length of database: 981
Effective search space: 571923
Effective search space used: 571923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_i21.g1 MSMg01no348_i21.g1 CHROMAT_FILE:
MSMg01no348_i21.g1 PHD_FILE: MSMg01no348_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:53 2005
(453 letters)
>mm_chr9_80033733_80034585
Length = 853
Score = 801 bits (414), Expect = 0.0
Identities = 449/473 (94%), Gaps = 20/473 (4%)
Strand = Plus / Plus
Query: 1 ctcacctagatggacctgaccctcaaactagataagcccct----------------tcc 44
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 181 ctcacctagatggacctgaccctcaaactagataagccccttccctccctcgatccctcc 240
Query: 45 ctccctcccttcttccctccctccctccctcgctcc----ctccctccctccctcccttc 100
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 241 ctccctcccttcttccctccctccctccctccctccctcgctccctccctccctcccttc 300
Query: 101 cttttgtcgggtattgtgtcctagcaacaaagaaagtgaccagtccaggcacaattgagg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttttgtcgggtattgtgtcctagcaacaaagaaagtgaccagtccaggcacaattgagg 360
Query: 161 tgcagctggccagcatgcactgcatttgccatttcgggtctgtttggttttctttttgat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcagctggccagcatgcactgcatttgccatttcgggtctgtttggttttctttttgat 420
Query: 221 agcaaaatctctaatttgaaatgaagagataaataaaagggttctttgttgaatctacta 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agcaaaatctctaatttgaaatgaagagataaataaaagggttctttgttgaatctacta 480
Query: 281 aagtgtgtagtttctgatccaagaagttgattcatgagcaacaagggcaggacagagtgt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagtgtgtagtttctgatccaagaagttgattcatgagcaacaagggcaggacagagtgt 540
Query: 341 cttttaccttgggatgtattcttcagagatgtaaattcctcagagctataagaccattct 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttttaccttgggatgtattcttcagagatgtaaattcctcagagctataagaccattct 600
Query: 401 ttgtcattaaaatttaaagagaanataacataccaagatagattctgaacagt 453
||||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 601 ttgtcattaaaatttaaagagaaaatagcatacaaagatagattctgaacagt 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
