BAC Information

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BAC

Clone NameMSMg01-348O06
Chromosome9 (Build37)
Map Location 68,463,479 - 68,463,739
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348O06.T7 (MSMg01no348_o06.b1)MSMg01-348O06.TJ (MSMg01no348_o06.g1)
ACCAG460878AG460879
length731755
length of high quality
(start - end)
64 (61 - 124)261 (70 - 330)
definitionCHROMAT_FILE: MSMg01no348_o06.b1 PHD_FILE: MSMg01no348_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:20 2005CHROMAT_FILE: MSMg01no348_o06.g1 PHD_FILE: MSMg01no348_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGTCGCTATACGACTCACTTTCAAAAGAGGATCCGCGGAATTCTC
TTTCCCGCCCTAGAGGTAATTTTGCTAAGTTAGTTTTATTTTGTGAGTAT
GCCTTGCCTCGCCCGTGAATGCACATACCATGCGGGTGCAATTTTTGTGG
ATTCCAAAGGAGGGCACTAGATCTCCAGGAACTGGAGTTATGAATCGTTG
TGAGCTACCCTGTGGGATACTAGGATGCAAACCCTGGTCCTCTGCATAAG
CATCAAGTCCTCTGATTCTTGCAGCAATCTCTCTTGCCCCTAGCAGATGC
TTTTTTATTTGTTGCATTCCTCAGCTCCACGAGCGCATCTTGATACAATG
ATTACTCGTTATCCGTAGGGAAATATCTACTTTTTAAGCCATATGATAAC
ACCCCCCCACACAATGATTATCGCTGTGATCTCTTCTCTAACTCCTATTG
TTTTATCTCTTGGATGCGCCGTTGTGCTTCAGTGCCGGTTAGACTTCTGC
TTACTGTTCTTTTATACTCCACTTCTGCTGACGACCCACGACGATCATCT
TGGCCATCCCCATCCCCCCCCTTTCTTCTTCCCCCCCTGCTTTTCTTTTC
GTTTTTCCTACGCCCTGCTCCACTTTCCCTTGTATCTCTCTTTATTCCTT
TCCCTTACCCATCGTTCTTTCCCCATTGTGTACTTCTTCTTCCCCCTTTT
CTCTTTCCTTTTTTCTCCCTTTCTTTTTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCTGACAGTACTACACACCTGGAGTGTGTG
CCCTGTGAGCCCCATCTCATGATTCCCTTGTGGAAACAGTGACGTCATAC
GCCATACTCTTCCCCTCTTGAACCCATGATCAAAATCTGCCTTGGAAGTG
CTCTTGTCACAGTCCTCCCCATCCAAGGCCTTAGTCTACAACTTAGGATC
CTCTGGTTATTATCATCGCTTATACCATATATCCACATCTGCCAGTCAGC
AGTCACCCTCTTTAAGGTGATTAACTTATTCATAAAGTATTATATTCATC
ATACTTTTGCTCTTGTATCTGTCTCCACCATTTTATCGCCTCTTCTTAAG
TATGTCACTATTTGAGACTGCTATTATTTTTCACGACATGCTTTTGTATT
ATGTCGCTACCCTTATCTCTAAATTGTCTATGCCCTGTGTTCTCTTTCAA
CATGTTCCCCTCCTCCATTGTTATTTTTTTGTCCCTCGCTACCAATGCCC
CCTTGTTTGTTATATCTGCCCACACTACCCCGATTTATCTCACTCCTGTT
ATTCTTCGACTCTTTCTATCTTCCTCTCACCCCCTCCCCAATTTTCTTTC
CCCCCCCTCTTAAACTTATCATTATCAATTGACTATCCCCACTTCTTCCT
TTTACGCTCTTTAATATATTTCATCCAAACCACATTTTCCTCCTTTTTCT
TCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_o06.g1 MSMg01no348_o06.g1 CHROMAT_FILE:
MSMg01no348_o06.g1 PHD_FILE: MSMg01no348_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:20 2005
         (261 letters)



>mm_chr9_68463279_68463939
          Length = 661

 Score =  482 bits (249), Expect = e-140
 Identities = 258/261 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctgacagtactacacacctggagtgtgtgccctgtgagccccatctcatgattccctt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 acctgacagtactacacacctggagtgtgtgccctgtgaaccccatctcatgattccctt 260

                                                                       
Query: 61  gtggaaacagtgacgtcatacgccatactcttcccctcttgaacccatgatcaaaatctg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggaaacagtgaagtcatacgccatactcttcccctcttgaacccatgatcaaaatctg 320

                                                                       
Query: 121 ccttggaagtgctcttgtcacagtcctccccatccaaggccttagtctacaacttaggat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttggaagtgctcttggcacagtcctccccatccaaggccttagtctacaacttaggat 380

                                                                       
Query: 181 cctctggttattatcatcgcttataccatatatccacatctgccagtcagcagtcaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctggttattatcatcgcttataccatatatccacatctgccagtcagcagtcaccct 440

                                
Query: 241 ctttaaggtgattaacttatt 261
           |||||||||||||||||||||
Sbjct: 441 ctttaaggtgattaacttatt 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)